Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01718 ATGTCAACTACAAGTTTCCTTGATTTCAAATACAACCTCTCAAAGAGAAAGTACTTGAGGAAGCCATCGCGTATGTTGTCAAGGGAGAGGCAAAACTCTGGACTGAAAAACATTTTTCAGCCTAGTGTTGATGAGATGAAGATGGTGTTTGACAAATTTGATTCCAATAAAGATGGGAAAATATCTCAACAGGAATACAAAGCCACCCTGAAATCTCTAGGCATGGGGAAATCGGTTCATGAAGTGCCAGATATTTTTCGGGTGGTCGATTTGGATGGAGATGGATTCATCAATTTTGAAGAATTTATGGAGGCTCAGAGGAAGGGTGGTGGTATTAGGTCGTTGGATATACAGAGTGCATTTAGAACATTTGATAAGAATGGTGATGGGAAAATAAGTGCTGAAGAAGTTAAAGAAATGTTGTGGAAGCTGGAAGAAAGGTGCAGCCTTGACGAGTGCAGGCGAATGGTGAGAGCAGTGGACACTAATGGAGATGGCATGGTTGACATGAACGAGTTTGTGGCCATGATGACTCAATCCATGAGACATGTTTGA 555 0.4144 MSTTSFLDFKYNLSKRKYLRKPSRMLSRERQNSGLKNIFQPSVDEMKMVFDKFDSNKDGKISQQEYKATLKSLGMGKSVHEVPDIFRVVDLDGDGFINFEEFMEAQRKGGGIRSLDIQSAFRTFDKNGDGKISAEEVKEMLWKLEERCSLDECRRMVRAVDTNGDGMVDMNEFVAMMTQSMRHV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01718 184 ProSiteProfiles EF-hand calcium-binding domain profile. 41 76 IPR002048 GO:0005509
Car06g01718 184 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 182 - -
Car06g01718 184 CDD EFh 116 178 IPR002048 GO:0005509
Car06g01718 184 ProSiteProfiles EF-hand calcium-binding domain profile. 77 111 IPR002048 GO:0005509
Car06g01718 184 CDD EFh 45 105 IPR002048 GO:0005509
Car06g01718 184 Gene3D - 4 109 - -
Car06g01718 184 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Car06g01718 184 Gene3D - 113 184 - -
Car06g01718 184 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Car06g01718 184 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Car06g01718 184 PANTHER CALCIUM-BINDING PROTEIN CML34-RELATED 1 182 - -
Car06g01718 184 SUPERFAMILY EF-hand 43 179 IPR011992 -
Car06g01718 184 ProSitePatterns EF-hand calcium-binding domain. 54 66 IPR018247 -
Car06g01718 184 Pfam EF-hand domain pair 45 105 IPR002048 GO:0005509
Car06g01718 184 Pfam EF-hand domain pair 116 177 IPR002048 GO:0005509
Car06g01718 184 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Car06g01718 184 SMART efh_1 45 73 IPR002048 GO:0005509
Car06g01718 184 SMART efh_1 81 109 IPR002048 GO:0005509
Car06g01718 184 SMART efh_1 116 144 IPR002048 GO:0005509
Car06g01718 184 SMART efh_1 152 180 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01718 Car-Chr6 16963485 16964387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01718 1 180 EF-hand Containing Proteins AT2G15680 60.541 1.99e-79 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01718 K13448 - gmx:100803158 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01718 06 16963485 16964387 Car06g01718 06 16963485 16964387 ECH