Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01697 ATGAGGGAGGAAACACATACATTTCACCGTTTCTCACAAGCAGAGAGAGAGAGAAAATTAAACAAAATGGCACAAGCACAACCCGAAGATAAGATCCATGAAAATCAAGAAAAAGAACCTCAACAAGAAACAAGTAATTCCAGTTTCAAATTCAATGTTCAAGCGCCTGAATTTGTTCCAAGGTCGCAGCATGCACACGTGCCAATTTCTGGTTATTTTTATCCATGCTTCCAGATTCTTGGTGGCTCTGGTGAATCTGATTGGTTCTACGTTGGGGATCAAGACCCTACATGTTTGATCCCCAATGCCAATGTTCCTCTCCCCAATTGCTCCAATAAGAATCTCCTCAACCCTGATCTCCAACAAAAGATCGTCAAACAGGTGGAGTATCAATTCAGTGACCTTAGCTTGATAGCAAATGAATCTTTCCAGAAACAGATGAATAAGGATCCTGAAGGTTATGTTCCAATTACTGTGATTGCTTCTACCAAAAAGATCAAGGCACTTGTTACTAACATCCACCTTCTTACACAAGCTATTCGCCATTCTTCTAAACTTGTTTTGAGTGTTGATGCTAAGAAGGTTAAACGCAAACATCCTTTCACTGAAAAGGAGAAAGACGAATTACAGTCTCGTACTGTTGTGGCAGAGAATTTACCTGATGATCATTCTCATCAAAATCTTCAGAAAATATTTACTGTAGTTGGGAGTGTGAAAACGATACGAATATGTCATCCCCAAGAACCAAATTCTTCACGCCCAAAAGGCGATTTCCTCATCTGTAACAAGCTACATGCACTTGTGGAATATGAGTCATCGGATGTAGCTGACAAAGCTGTTGAGAAGTTAAATGATGAAAGGAATTGGAGGAAAGGGATGCGAGTAAGATTGCTGCTTAGATGCTCGCCAAAATCTGTTTTGAAGAATAGAAAATCAGAATTTGATGGCTATCTAGATGAAGATGAGAATTTACATTCTGAAACTGCCGAAGATTCTTCTCATCCAAACAACACTGAATTATGTGTTGACAATAATGGTGATGAAACTTCAGTAGGATCAAAGAAAGGGTGGGCTAGAGGGCGTGGAAAGGGAAGAGGACGCCCTCAAAACCACACTGGACGAGGCTTGCTTGCGCCGCCATCTCCATCAAGCAGCCTCGTCCTGAGTGAAGTATCAACTAAACCCAACGCCAAGGGCCCTAGAATGCCGGATGGTACAAGAGGTTTCGCCATGGGACGAGGCAAGCCAATTAGTTCTCCCACTTCACCTCAGGAGTAA 1278 0.4194 MREETHTFHRFSQAERERKLNKMAQAQPEDKIHENQEKEPQQETSNSSFKFNVQAPEFVPRSQHAHVPISGYFYPCFQILGGSGESDWFYVGDQDPTCLIPNANVPLPNCSNKNLLNPDLQQKIVKQVEYQFSDLSLIANESFQKQMNKDPEGYVPITVIASTKKIKALVTNIHLLTQAIRHSSKLVLSVDAKKVKRKHPFTEKEKDELQSRTVVAENLPDDHSHQNLQKIFTVVGSVKTIRICHPQEPNSSRPKGDFLICNKLHALVEYESSDVADKAVEKLNDERNWRKGMRVRLLLRCSPKSVLKNRKSEFDGYLDEDENLHSETAEDSSHPNNTELCVDNNGDETSVGSKKGWARGRGKGRGRPQNHTGRGLLAPPSPSSSLVLSEVSTKPNAKGPRMPDGTRGFAMGRGKPISSPTSPQE 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01697 425 MobiDBLite consensus disorder prediction 1 40 - -
Car06g01697 425 Pfam Ataxin-2 C-terminal region 47 63 IPR009818 -
Car06g01697 425 MobiDBLite consensus disorder prediction 1 47 - -
Car06g01697 425 CDD RRM_La_like_plant 212 299 IPR034878 GO:0003723
Car06g01697 425 Gene3D - 117 203 IPR036388 -
Car06g01697 425 MobiDBLite consensus disorder prediction 330 351 - -
Car06g01697 425 PANTHER LA-RELATED PROTEIN 6C 27 418 - -
Car06g01697 425 Pfam La domain 124 181 IPR006630 -
Car06g01697 425 Gene3D - 204 305 IPR012677 -
Car06g01697 425 MobiDBLite consensus disorder prediction 376 392 - -
Car06g01697 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 297 IPR000504 GO:0003723
Car06g01697 425 MobiDBLite consensus disorder prediction 325 425 - -
Car06g01697 425 SUPERFAMILY RNA-binding domain, RBD 194 299 IPR035979 GO:0003676
Car06g01697 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 285 IPR000504 GO:0003723
Car06g01697 425 PRINTS Lupus La protein signature 127 144 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Car06g01697 425 PRINTS Lupus La protein signature 153 168 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Car06g01697 425 PRINTS Lupus La protein signature 184 197 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Car06g01697 425 PRINTS Lupus La protein signature 206 222 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Car06g01697 425 PANTHER LUPUS LA PROTEIN-RELATED 27 418 IPR045180 -
Car06g01697 425 SUPERFAMILY "Winged helix" DNA-binding domain 117 201 IPR036390 -
Car06g01697 425 SMART la 118 198 IPR006630 -
Car06g01697 425 ProSiteProfiles La-type HTH domain profile. 114 205 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01697 Car-Chr6 16736014 16738805 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01697 K15191 - gmx:100796786 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01697 06 16736014 16738805 Car06g01697 06 16736014 16738805 ECH