Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00869 ATGTTGAGAATCACAAAGCGCAATATGGAGCATAAGAATTGTGATTTCCAACTAGCAGTGTTCATCATCTTCCCATGCCTCGGTTTAATCCTAACCTTCAACTACTTCATCTCATTCATCACATGGATCTTCAAGATGTGCCTCCGATCTGAAAAGCACCTCATCAAATCCTACGGTTCATGGGCTATAATCACCGGAGCAACCGATGGCATCGGAAAAGCCTTCGCTTACCAACTAGCACACAGAAATCTCAACCTAATTATCGTCAGTAGAAATTCAAAGAAACTCGAAACAGTTGAAAACGAAATCAAAACAAAATACCCTCACGTTCAGATTAAAACCATCACTGTGGATTTTTCCGGCGACATTACGGTGGGTCTCCGGGAAATAGAAGTTTTGGGACGTGATTTGGATGTTGGAATTTTGATTAACAATGTGGGAATTACTTATCCTAAGGCTATGTTCTTTCATGAAGTGAAGGAGGAAATGTGGATGAAGATTGTTAGTGTGAACATTGAAAGTATGATGAGAGTAACGAAAGGTGTTTTGTGTGGGATGATGGAAAGGAAGAAGGGTATGATTGTAAATGTTGGGTCTGGTGCAGGGGTACTAGTGCCTTCACATCCTCTGTTTACAATCTATGCTGCAACTAAAGCTTTTGTGGATCGATTTTCAAGATCTTTATACGTGGAGTACAAACAATATGGGATCGACGTACAATGCCAGCTCCCACTTTATGTTGCGACGAACATGGTATCAAAAGTAGCATATATTAGGAGAGAATCTTTATTCATACCAACACCTGAAGATTATGCAAGAGCTGCTATTCGTCAAATTGGGTATGGACCAAAGTGCACACCTTATTGGGCTCACTCAGTTCAATGGGCCTTTGCACGCTTAATCCCCGACCCACTTCTTGATTATTGGCGCCTGTCCATTGGTATGCGACGCAGGAATCACAAGCACTAG 969 0.4169 MLRITKRNMEHKNCDFQLAVFIIFPCLGLILTFNYFISFITWIFKMCLRSEKHLIKSYGSWAIITGATDGIGKAFAYQLAHRNLNLIIVSRNSKKLETVENEIKTKYPHVQIKTITVDFSGDITVGLREIEVLGRDLDVGILINNVGITYPKAMFFHEVKEEMWMKIVSVNIESMMRVTKGVLCGMMERKKGMIVNVGSGAGVLVPSHPLFTIYAATKAFVDRFSRSLYVEYKQYGIDVQCQLPLYVATNMVSKVAYIRRESLFIPTPEDYARAAIRQIGYGPKCTPYWAHSVQWAFARLIPDPLLDYWRLSIGMRRRNHKH 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00869 322 Pfam short chain dehydrogenase 61 255 IPR002347 -
Car06g00869 322 CDD 17beta-HSD1_like_SDR_c 59 302 - -
Car06g00869 322 PRINTS Glucose/ribitol dehydrogenase family signature 61 78 IPR002347 -
Car06g00869 322 PRINTS Glucose/ribitol dehydrogenase family signature 137 148 IPR002347 -
Car06g00869 322 PRINTS Glucose/ribitol dehydrogenase family signature 186 202 IPR002347 -
Car06g00869 322 PRINTS Glucose/ribitol dehydrogenase family signature 214 233 IPR002347 -
Car06g00869 322 PRINTS Glucose/ribitol dehydrogenase family signature 235 252 IPR002347 -
Car06g00869 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 58 312 IPR036291 -
Car06g00869 322 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 21 321 - -
Car06g00869 322 PIRSF 11-beta-HSD1 10 322 - -
Car06g00869 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 148 IPR002347 -
Car06g00869 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 192 200 IPR002347 -
Car06g00869 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 214 233 IPR002347 -
Car06g00869 322 Gene3D - 54 287 - -
Car06g00869 322 PANTHER RH59310P 21 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00869 Car-Chr6 8477264 8479684 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00869 36 319 Lipid Metabolism Gene Families AT1G24470 57.746 4.45e-120 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00869 K10251 - mnt:21410235 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00869 06 8477264 8479684 Car06g00869 06 8477264 8479684 ECH