Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00853 ATGCGGTTACAGTCGTGGCTAGACACATGCTCCTCCGTAAACTGCGCCACAGCCACCAACAACTCAACCATTTCACTTCCAATACTCCGATCACATAAACAACATGCATCCGAATACTCAACCACCTCTTCTTCCACCTCCACAGCAACCTCCGATGAAAGCACCTCCAGTACTCTTCACACCAACTACTCCATACAAACACTCCCATCCCTTCCTTCTCTCCAAAAACTCTCTCCACAAAACTTCTCCGTCTCTCACCACTGTCTCACTTCCTTCACACCCCGCCCCTCTCGCCCAATCACCTCCCTCGCCATTCACAACAACCTTCTCTACGCCGCAACCGAAAACCTAATCAACGTCTACGATCGCCACACGTGTACAAATCTCCACTCCTTCAATTCCACTTCCTCTGGCTCCACCAAAGCCATTACCTTCTCCAAAGATATGCTCTTCACAACCCACCAAGACTGCAAAATCCGCGTCTGGCACCACCGCCGCCGACGCAACCACCGCATGTTAACAACCCTTCCCACCGTCAACGATTTTCTCCGCCGCTTCCTCTTCCCGAAAAACTACGTCACCGTCCGCCGCCACGACAAACGCCTCTGGATTCAACACGCCGATGCCGTAACCGACCTCGCCGTTTCTAACGGCGTTATCTACTCCGTTTCGTGGGATAAAACACTCAAAATATGGAGAATCTCGGATCTTCGTTGTGTTGAGTCGGTCAACGCTCATGAAGATGCGGTCAATGCGGTTGCAGTTTCCAATGATGGAACCGTTTACACTGGATCAGCCGATAGACGAATACGGGTTTGGGCTAAACCCGTTGGAGAAAAGCGCCACGTTATGGTTGCCACTTTGGAGAAGCATAAATCAGCTGTTAATGCGCTGGCACTAAACGACGACGGTTCGGTTTTATTTTCGGGTGCCTGTGACCGTTCGATATTGGTGTGGGAGAGAGAGGATAGTGCGAATCATATGGTGGTGAGTGGGGCTTTGAGGGGGCATCAGAATGCGATACTTTGTTTGATCAACGTCTCTGATTTGCTTCTTAGTGGATCGGCTGATCGGACGGTTAGGATTTGGAAGCGAGTCTATGATGGATCGTTTTGTTGCGTTGGTGTTCTTGATGGTCACGGAAAACCTGTGAAGTCGTTGACGGCAGTTTCAGAGTATGATGATCAAAGTTCCACTAACGGCGTCGTTTCTGTTTATAGTGGTTCACTGGATGGTGAGATAAAGATTCCTTTTGTTGAAATGGAAGAATCTTCGAACCCTAATGTACCGACTATACCCGAAATTAAATTGAAACCGAATCAGAAAAGAAAGATTCCTTCACCAAAACAGTTGATATCACATTATGAATCACAAGGGATGGATTCACAAGAAGCTTCATTGAAAGTGATAGAGGATTTACAGAAGGCGTTGTTTGGAATAATTTCATCTAGTAAAGGTAAAAAAGATAGGATTATGAATGAATCTTCAAGAAAAATGGATTCAGTGAACAATAGACTCACTATACTTGACATGAAGCTTGATACTAAGCCCGGTTATGTTGAGACGTTCGCAATTGGACTTGCATCTGGTGTTGCTCTTAAAGGAATTGGAGCTGTAATTCCCCACATTTTTTCTCCAATTGTTCAAATTTGGAATTCTGTTACCACGGCTACTAAATCTACCCCACAATGA 1692 0.4628 MRLQSWLDTCSSVNCATATNNSTISLPILRSHKQHASEYSTTSSSTSTATSDESTSSTLHTNYSIQTLPSLPSLQKLSPQNFSVSHHCLTSFTPRPSRPITSLAIHNNLLYAATENLINVYDRHTCTNLHSFNSTSSGSTKAITFSKDMLFTTHQDCKIRVWHHRRRRNHRMLTTLPTVNDFLRRFLFPKNYVTVRRHDKRLWIQHADAVTDLAVSNGVIYSVSWDKTLKIWRISDLRCVESVNAHEDAVNAVAVSNDGTVYTGSADRRIRVWAKPVGEKRHVMVATLEKHKSAVNALALNDDGSVLFSGACDRSILVWEREDSANHMVVSGALRGHQNAILCLINVSDLLLSGSADRTVRIWKRVYDGSFCCVGVLDGHGKPVKSLTAVSEYDDQSSTNGVVSVYSGSLDGEIKIPFVEMEESSNPNVPTIPEIKLKPNQKRKIPSPKQLISHYESQGMDSQEASLKVIEDLQKALFGIISSSKGKKDRIMNESSRKMDSVNNRLTILDMKLDTKPGYVETFAIGLASGVALKGIGAVIPHIFSPIVQIWNSVTTATKSTPQ 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00853 563 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 334 364 - -
Car06g00853 563 MobiDBLite consensus disorder prediction 37 56 - -
Car06g00853 563 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 288 320 - -
Car06g00853 563 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 273 IPR001680 GO:0005515
Car06g00853 563 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 364 IPR001680 GO:0005515
Car06g00853 563 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 28 422 IPR045182 -
Car06g00853 563 SUPERFAMILY WD40 repeat-like 96 416 IPR036322 GO:0005515
Car06g00853 563 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 242 IPR001680 GO:0005515
Car06g00853 563 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 329 IPR001680 GO:0005515
Car06g00853 563 Gene3D - 193 279 IPR015943 GO:0005515
Car06g00853 563 PANTHER F21J9.19 28 422 - -
Car06g00853 563 Gene3D - 280 443 IPR015943 GO:0005515
Car06g00853 563 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 243 273 - -
Car06g00853 563 Pfam WD domain, G-beta repeat 372 416 IPR001680 GO:0005515
Car06g00853 563 Pfam WD domain, G-beta repeat 333 364 IPR001680 GO:0005515
Car06g00853 563 Pfam WD domain, G-beta repeat 286 319 IPR001680 GO:0005515
Car06g00853 563 Pfam WD domain, G-beta repeat 238 273 IPR001680 GO:0005515
Car06g00853 563 Gene3D - 73 183 IPR015943 GO:0005515
Car06g00853 563 SMART WD40_4 236 274 IPR001680 GO:0005515
Car06g00853 563 SMART WD40_4 125 163 IPR001680 GO:0005515
Car06g00853 563 SMART WD40_4 370 418 IPR001680 GO:0005515
Car06g00853 563 SMART WD40_4 85 122 IPR001680 GO:0005515
Car06g00853 563 SMART WD40_4 281 320 IPR001680 GO:0005515
Car06g00853 563 SMART WD40_4 327 364 IPR001680 GO:0005515
Car06g00853 563 SMART WD40_4 197 233 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00853 Car-Chr6 8357705 8363291 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00853 237 387 Acyl Lipid Metabolism Gene Families AT3G18860 29.299 5.83e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00853 - - gmx:100817776 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00853 06 8357705 8363291 Car06g00853 06 8357705 8363291 ECH