Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00846 ATGTATCATAGTGTCGCTGCACGGCGCCTACTATACCGTTCTCAAATATCCTACTACGTCAAAGCTGGTCTCATCGATACTGCCATCAAACTGTTCGACGAAATGTCCCAAACAAATTCTCGCCCTTTCAGCATCGACTACAACCGTTTCATCGGCGTTCTCATCCGTCACTCTCATCTCGACCTTGCCCAATCCTATTACCGCCGCCACGTCATCCCCAACGGTTTCTCCCTCACCCCTTTCACCTATTCCCGTTTCATCGCCGCTCTCTGTTCCGTCAAAAACTTCTCCCTAATCGATTATCTTCTCCGTGACATGGACGCTTTAGGTTTTGTTCCTGATATTTGGGCTTTTAACATTTACCTTAACCTTCTCTGCCGTGAAAATCAACTAGAAACTGCTCTTCAATTGTTTCGCACCATGCCTTTGAAAGGAAGAGAGCCTGATGTTGTTTCTTATAACATTATCGTTAATGCTTTGTGTAAGGCTAAAAGGGTTGACGAGGTTGCTCGTGTTTGGCGTAGTTTGATTGAGAAAGGGTTGAAGCCTGATTTTAAGGTTTGTGCTGCGCTTGTTGTTGGGTTGTGTAGTGCTGGCAATGTTGATTTGGCGTATGAACTTATTGTTGGTGTGATTAATGGTGGTGTTAAGGTTAATTGTTTGGTTTATAATGCTTTGATTAGTGGGTTTTGTAGGATGGGTAGGATTGATAAGGCATTGGCGATTAAAGGGTTTATGAGTAGGAATGGCTGTGTGCCTGATTTGGTTACTTATAATATTTTGTTGAATTATTGTTGTGATGAGGTTATGCTTGATGAGGTGgtgaagttggtggagagtatggagaggagtggtgtggagCCTGATTTGTATAGTTATAATGAGCTGCTCAAGGGTTTTTGTAAGGCTAATCAGGTGGATAGAGCTTATTTGACTATGGTTAAGAGGATGCAAACTAAAGGGATGTGtgatgttgtctcttacaatactataattgcggctttttgtaaggcgcggcggattgagagaggttatgagttgtttgaggaaatgcgtaggaaagggattcaaccggatgtgataacgttcactgtacttatagaagcgttttttaaggaaggtggttctgatgttgccaagaagctTCTTGATCAAATGACGACGATGGGGATTGTTCCCGATTTAATATTCTATACAACAATAGTTGACCGGCTGTGCAAGGCCTGGAAGGTTGATATTGCTCATGGTGTTTTTTGTGACATGGTGGAGAATGGAGTGAGTCCAGATGTGGTCTCATACAATGCACTCATAAATGGGTTTTGCAAGGCTTCTAGAGTTATGGATGCCATGTGTCTATACGATGAAATGCAGGATAAAGGATTATACCCGGACGGGGTCACTTTCAAGTTGATAGTTGGAGGGCTCATTAGGGAAAACAAGATTTCAGAGGCATGTAAGGTTTGGGATCAGATGATGGAAAAAGGATTCACTCTTGACAGACGTCTCTCTGAGACTCTAGTCAATGCTATGAAATCAAGGGATGGCACATGA 1551 0.3662 MYHSVAARRLLYRSQISYYVKAGLIDTAIKLFDEMSQTNSRPFSIDYNRFIGVLIRHSHLDLAQSYYRRHVIPNGFSLTPFTYSRFIAALCSVKNFSLIDYLLRDMDALGFVPDIWAFNIYLNLLCRENQLETALQLFRTMPLKGREPDVVSYNIIVNALCKAKRVDEVARVWRSLIEKGLKPDFKVCAALVVGLCSAGNVDLAYELIVGVINGGVKVNCLVYNALISGFCRMGRIDKALAIKGFMSRNGCVPDLVTYNILLNYCCDEVMLDEVVKLVESMERSGVEPDLYSYNELLKGFCKANQVDRAYLTMVKRMQTKGMCDVVSYNTIIAAFCKARRIERGYELFEEMRRKGIQPDVITFTVLIEAFFKEGGSDVAKKLLDQMTTMGIVPDLIFYTTIVDRLCKAWKVDIAHGVFCDMVENGVSPDVVSYNALINGFCKASRVMDAMCLYDEMQDKGLYPDGVTFKLIVGGLIRENKISEACKVWDQMMEKGFTLDRRLSETLVNAMKSRDGT 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00846 516 Gene3D Tetratricopeptide repeat domain 3 92 IPR011990 GO:0005515
Car06g00846 516 Gene3D Tetratricopeptide repeat domain 409 515 IPR011990 GO:0005515
Car06g00846 516 Gene3D Tetratricopeptide repeat domain 311 408 IPR011990 GO:0005515
Car06g00846 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Car06g00846 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Car06g00846 516 Pfam PPR repeat family 324 372 IPR002885 -
Car06g00846 516 Pfam PPR repeat family 428 475 IPR002885 -
Car06g00846 516 Pfam PPR repeat family 253 302 IPR002885 -
Car06g00846 516 Pfam PPR repeat family 113 162 IPR002885 -
Car06g00846 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Car06g00846 516 TIGRFAM PPR: pentatricopeptide repeat domain 256 289 IPR002885 -
Car06g00846 516 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Car06g00846 516 TIGRFAM PPR: pentatricopeptide repeat domain 151 184 IPR002885 -
Car06g00846 516 TIGRFAM PPR: pentatricopeptide repeat domain 291 322 IPR002885 -
Car06g00846 516 TIGRFAM PPR: pentatricopeptide repeat domain 398 430 IPR002885 -
Car06g00846 516 TIGRFAM PPR: pentatricopeptide repeat domain 466 499 IPR002885 -
Car06g00846 516 TIGRFAM PPR: pentatricopeptide repeat domain 16 40 IPR002885 -
Car06g00846 516 TIGRFAM PPR: pentatricopeptide repeat domain 117 150 IPR002885 -
Car06g00846 516 TIGRFAM PPR: pentatricopeptide repeat domain 326 360 IPR002885 -
Car06g00846 516 TIGRFAM PPR: pentatricopeptide repeat domain 222 254 IPR002885 -
Car06g00846 516 TIGRFAM PPR: pentatricopeptide repeat domain 431 464 IPR002885 -
Car06g00846 516 TIGRFAM PPR: pentatricopeptide repeat domain 81 115 IPR002885 -
Car06g00846 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Car06g00846 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 320 IPR002885 -
Car06g00846 516 Pfam PPR repeat 16 36 IPR002885 -
Car06g00846 516 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 2 515 - -
Car06g00846 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Car06g00846 516 Gene3D Tetratricopeptide repeat domain 212 284 IPR011990 GO:0005515
Car06g00846 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Car06g00846 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Car06g00846 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Car06g00846 516 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 2 515 - -
Car06g00846 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Car06g00846 516 Pfam PPR repeat 215 242 IPR002885 -
Car06g00846 516 Pfam PPR repeat 389 422 IPR002885 -
Car06g00846 516 Gene3D Tetratricopeptide repeat domain 96 211 IPR011990 GO:0005515
Car06g00846 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Car06g00846 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 8 42 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00846 337 513 Glycosyltransferase AT1G05670 25.281 2.12e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00846 - - aprc:113872581 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00846 06 8317519 8319069 Car06g00846 06 8317519 8319069 ECH