Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00600 ATGTCTGAAGCAGGCCAAGCCATGGACATGAGTTTTTCCAAACCAAAACCATCTCCGGCCGCCGATCACGGCCGTGGAACCAACCCGCCGATGGATCATGTTCTATTGGCTTTGCGTGAGACTAAAGAAGAGAGGGAACTTCGAATTCGGAGTTTGTTTAATTTCTTTGATGCTGCAAACAATGGTTACTTGGATTATGCTCACATTGAAGCAGGGTTATCTGCACTTCAGATACCTCCTGAATATAAATATGCTAAGGAACTTTTCAAGGTTTGTGATGCTGATAGAGATGGGAGAATCGATTATCACGATTTTCGACGTTATATGGATGATAAAGAACTTGAACTTTACCGTATTTTTCAAGCTATTGATGTTGAACATAATGGTTGTATTCTTCCTGAAGAACTTTGGGATGCACTTGTCAAGGCTGGTATTGAAATTGATGAGGCGGAACTTGCTCGCTTTGTTGAACATGTTGATAAGGATAATAATGGAATTATCACTTTTGAAGAATGGAGAGATTTTCTTCTACTTTATCCTCATGAAGCAACCATGGAAAACATATATCAACATTGGGAGAGGGTGTGTCTTGTAGACATTGGAGAACAAGCTGTGATTCCTGAAGGCATCAGCAAGCATGTGCACAGGAGTAGATATTTTATCGCAGGTGGAATAGCAGGAGCCGCATCTCGCACAGCAACTGCTCCTCTTGATCGTCTAAAGGTGATCTTACAAATCCAGACTGGACGGGCTTCGATCATGCCAGCAGTGATGAAGATATGGCAACGGGATGGTTTATTAGGGTTTTTCCGAGGTAATGGATTAAATGTTGTGAAGGTAGCGCCAGAGAGTGCCATCAAGTTTTATGCTTACGAAATGCTGAAAAATGTAATTGGAGATAGTCAAGGGAACAAGTCAGATATTGGTACTGCCGGAAGACTTTTTGCAGGTGGCATGGCTGGTGCCATTGCACAGATTGCTATCTATCCATTGGATCTTATTAAAACTAGGTTACAGACTTGTGTTTCTGAAGATGGAAAGGGTCCTAAGCTGGGAAAACTTACAAAGGATATATGGGTCCAAGAGGGACCCCGGGCTTTCTATAGAGGGCTTGTTCCATCTCTTCTTGGAATGATTCCTTATGCAGGCATTGATCTCACTGCTTATGACACCTTGAAAGATGTATCCAAGAAATATATTATTCATGACAGTGAACCTGGTCCTCTAATACAACTCGGATGTGGGACGGTTTCGGGAGCTCTTGGAGCTACTTGTGTCTACCCACTTCAGGTTATTCGTACAAGGCTGCAGGCACAACCTACCAACACTTCTAGTGCTTACAGGGGAATGTCTGATGTTTTTTGGAAAACTCTTAAGGACGAAGGCTTTCGAGGGTTCTACAAGGGACTCATTCCAAATCTCCTCAAAGTTGTGCCAGCTGCAAGCATTACTTATATGGTTTATGAGAATATGAAGAAAAGTTTAGATCTTGATTAG 1497 0.4228 MSEAGQAMDMSFSKPKPSPAADHGRGTNPPMDHVLLALRETKEERELRIRSLFNFFDAANNGYLDYAHIEAGLSALQIPPEYKYAKELFKVCDADRDGRIDYHDFRRYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGIEIDEAELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATMENIYQHWERVCLVDIGEQAVIPEGISKHVHRSRYFIAGGIAGAASRTATAPLDRLKVILQIQTGRASIMPAVMKIWQRDGLLGFFRGNGLNVVKVAPESAIKFYAYEMLKNVIGDSQGNKSDIGTAGRLFAGGMAGAIAQIAIYPLDLIKTRLQTCVSEDGKGPKLGKLTKDIWVQEGPRAFYRGLVPSLLGMIPYAGIDLTAYDTLKDVSKKYIIHDSEPGPLIQLGCGTVSGALGATCVYPLQVIRTRLQAQPTNTSSAYRGMSDVFWKTLKDEGFRGFYKGLIPNLLKVVPAASITYMVYENMKKSLDLD 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00600 498 PANTHER SOLUTE CARRIER FAMILY 25 57 496 - -
Car06g00600 498 SUPERFAMILY EF-hand 32 213 IPR011992 -
Car06g00600 498 ProSiteProfiles Solute carrier (Solcar) repeat profile. 214 297 IPR018108 -
Car06g00600 498 Pfam Mitochondrial carrier protein 408 495 IPR018108 -
Car06g00600 498 Pfam Mitochondrial carrier protein 217 300 IPR018108 -
Car06g00600 498 Pfam Mitochondrial carrier protein 307 398 IPR018108 -
Car06g00600 498 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Car06g00600 498 ProSitePatterns EF-hand calcium-binding domain. 160 172 IPR018247 -
Car06g00600 498 Pfam EF-hand domain pair 86 111 IPR002048 GO:0005509
Car06g00600 498 SMART efh_1 48 76 IPR002048 GO:0005509
Car06g00600 498 SMART efh_1 84 112 IPR002048 GO:0005509
Car06g00600 498 SMART efh_1 151 179 IPR002048 GO:0005509
Car06g00600 498 SMART efh_1 115 143 IPR002048 GO:0005509
Car06g00600 498 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 57 496 - -
Car06g00600 498 Pfam EF-hand domain pair 115 174 IPR002048 GO:0005509
Car06g00600 498 Gene3D Mitochondrial carrier domain 210 496 IPR023395 -
Car06g00600 498 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Car06g00600 498 PRINTS Mitochondrial carrier protein signature 219 232 IPR002067 GO:0055085
Car06g00600 498 PRINTS Mitochondrial carrier protein signature 232 246 IPR002067 GO:0055085
Car06g00600 498 PRINTS Mitochondrial carrier protein signature 272 292 IPR002067 GO:0055085
Car06g00600 498 PRINTS Mitochondrial carrier protein signature 323 341 IPR002067 GO:0055085
Car06g00600 498 PRINTS Mitochondrial carrier protein signature 368 386 IPR002067 GO:0055085
Car06g00600 498 PRINTS Mitochondrial carrier protein signature 415 437 IPR002067 GO:0055085
Car06g00600 498 SUPERFAMILY Mitochondrial carrier 213 490 IPR023395 -
Car06g00600 498 ProSiteProfiles Solute carrier (Solcar) repeat profile. 308 395 IPR018108 -
Car06g00600 498 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Car06g00600 498 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Car06g00600 498 ProSiteProfiles Solute carrier (Solcar) repeat profile. 406 494 IPR018108 -
Car06g00600 498 Gene3D - 127 202 - -
Car06g00600 498 ProSiteProfiles EF-hand calcium-binding domain profile. 116 146 IPR002048 GO:0005509
Car06g00600 498 MobiDBLite consensus disorder prediction 1 29 - -
Car06g00600 498 Gene3D - 28 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00600 Car-Chr6 6065556 6069334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00600 3 498 EF-hand Containing Proteins AT5G51050 73.600 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00600 K14684 - gmx:100791305 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00600 06 6065556 6069334 Car06g00600 06 6065556 6069334 ECH