Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00545 ATGGGGTCCCTTCCTCTCACTAGTAATAAAGCCTTATTCACCACTCACTTTCCTTGCTTTTCATCATCACATAGAAGAACAACAACCAGAACGCTTTATCTGAATTACAGGAAATACAACACCAATGTTTTTGCCTCTCGCTCACATGATGATGACAATAACACCCCTAAATTTGACAATAACGACCTCATGGAACTCAAGTTCGGTCGTTTACTTGGCGAAGACCCTAAACTCACCCTTGCCAAGATAATGGGAAAAAAGGCCAACCCTGATGTTTCTTATCTTGATATTGAGAAATCCTTTTATAAGAAAAAGAAGGGTAAAGTTGTGGAAATAGAGGAACTTCCATTTGAAGTTGAAAGACCTTGGGCAAAGAATTTACCTCCCAAACAAGGATTGCAATTCAAACCTGATGATGATAAGAAAGTTGCAATGGAGATTAACAAACCCAACCAACCTCAAAGTAATTCAGGGAATGTTATAAAAAGTAGTGTTCCTAATGTTATTCTGAGAAAGCCATCGTTGTATAAAGAGGACGAGAACGAGGACGAAAGCGAGGGAAATTCCTCGAGGTTGAGAATACGACCTAATTTGTCTTTGAAAATGCAGAGTGGACAAGTGAAGGAGAAGTTTAGTGACATGACACTGTTGAGGAAGCCCGAATCGTCAATTGCCAAGAATACTGACAGTGAATTGAAGGTGCGGAAAGAAGAGCCGAATTATGAAGTTGTTAACTTGACCTTGTTGGAACAACCACACAGACCAAGTTCACACAGACCGAGCATCAAAAAACAACAAGAGCAGTTTCGAGAGCCGAGTGATGACGTTGGTAACTTAACCTTGTTGGAACAACCTCATAGACCAAATGTCAATAAACAACAAGAGCAGTTTCAAGAGCCGAAAGATGAAGTTGGTAACTTGACCTTGTTGGAACAACCACACAGACCAAGTGTCAATAAACAACAAGAGCTGTTTCAAGAGCCGACTGATGAAGGCGTTAAATTGACCTTGTTGGAACAACCACACAGACCAAGTGGCAAAGAAGAAGAAGAAGAGCAGTTTGGAGATGCGAGAGTCGTAGTCCCAAATGATGGATCAGAGCAACATGAGCAAATACAATCAGAAGTCCATCAGGAGCTGATTAATTTAAATCAACTGTCTGATTTAAATTCAGTCGATTCCAAAACGGAGTTGTCCGTGGAAGCTGCAATTCAAGGAAAGCCAAAAAGATTAGATCGATATGTGAAAAAAACTTCACAATCTGTTGAAGAAGAGACCGCTTCCCTCGATCCTGGAGGTCGCGAAAACAGTGAAGAATCAGGCAATCTTGTTGATGTCAACGATATTCAGGAAAGAGAAGATGCAGATTGGACCAAGGCAGAAGGTTTGATTAAGACTGGAGATAGAGCTGATGTGGAACTAGTAAGCTGCAGCACCAAGGGATTTGTTGTTTCTTTTGGTACCTTGGTAGGATTTCTGCCATACCGAAATCTTTTGTCCAGGTGGAAGTTCTTAGCTTTTGAGTCATGGTTAAGACAGAAGGGATTGGATCCATCACTGTACAAGCAAACCTTGGCCACTGTGACAAATTATGATGCTGAAAATAATAATATTTCTACTGATTCACCTTCACATATTGAGAATGATGGTAAATTTGAAGATAAAATTTCACCTGATATGAAATTGGAAGATCTGCTGAGGATTTATGACCAAGAGAAAAACAAGTTCTTATCATCGTTTATTAGACAGAAAGTTAAAGCATATGTGTTATTGGCAGACAGAAAATTGAAAAAGCTCATGTTTTCACTAAAACCAAAAGAGAAGGAAGAACTAACTGAGAAGAAGAGAAATCTCATGGCTAGACTTCAAGTTGGTGATTTAGTGAAATGCCGCGTCCAGAAGATAACTTACTTCGGAATTTTTGTTGAGGTTGAAGGAGTTTCTGCACTAGTTCATCAGTCAGAGATATCGTGGGATCCCTCGTTGGACCCATCTAATTATTTTAAGATTGATCAGGTTGTAGAGGCCAAAGTTCACCAATTAAACTCTGCTCTCGGGCGCATATTTTTATCATTAAAGGAGGTCACGCCTGATCCATTGATGGAATCCTTAGAGTCTGTAGTTGGGGATCATGAACCCTTTGATGGGAGATTGGAAGCAGCTCAAACAGATGAACAGTGGTCTGAAGTCGAATCTCTTATAAAAGAATTGCAAAAAATTGAGGGCGTTCAGTCTGTTTCAAAAGGCCGTTTTTTCAGGAGCCCTGGTTTAGCTCCCACTTTTCAGGTTTATATGGCATCCATCTTTGAGAATCAGTACAAGTTGCTTGCCCGATCAGGAAACAAAATACAAGAGGTGATTGTTCAAACTTCTTTAGATAAAGAAACGATGAAATCAGCACTTATGACATGTGCAAATAGAGTAGAATAG 2430 0.3988 MGSLPLTSNKALFTTHFPCFSSSHRRTTTRTLYLNYRKYNTNVFASRSHDDDNNTPKFDNNDLMELKFGRLLGEDPKLTLAKIMGKKANPDVSYLDIEKSFYKKKKGKVVEIEELPFEVERPWAKNLPPKQGLQFKPDDDKKVAMEINKPNQPQSNSGNVIKSSVPNVILRKPSLYKEDENEDESEGNSSRLRIRPNLSLKMQSGQVKEKFSDMTLLRKPESSIAKNTDSELKVRKEEPNYEVVNLTLLEQPHRPSSHRPSIKKQQEQFREPSDDVGNLTLLEQPHRPNVNKQQEQFQEPKDEVGNLTLLEQPHRPSVNKQQELFQEPTDEGVKLTLLEQPHRPSGKEEEEEQFGDARVVVPNDGSEQHEQIQSEVHQELINLNQLSDLNSVDSKTELSVEAAIQGKPKRLDRYVKKTSQSVEEETASLDPGGRENSEESGNLVDVNDIQEREDADWTKAEGLIKTGDRADVELVSCSTKGFVVSFGTLVGFLPYRNLLSRWKFLAFESWLRQKGLDPSLYKQTLATVTNYDAENNNISTDSPSHIENDGKFEDKISPDMKLEDLLRIYDQEKNKFLSSFIRQKVKAYVLLADRKLKKLMFSLKPKEKEELTEKKRNLMARLQVGDLVKCRVQKITYFGIFVEVEGVSALVHQSEISWDPSLDPSNYFKIDQVVEAKVHQLNSALGRIFLSLKEVTPDPLMESLESVVGDHEPFDGRLEAAQTDEQWSEVESLIKELQKIEGVQSVSKGRFFRSPGLAPTFQVYMASIFENQYKLLARSGNKIQEVIVQTSLDKETMKSALMTCANRVE 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00545 809 Pfam S1 RNA binding domain 622 693 IPR003029 GO:0003676
Car06g00545 809 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 2 809 - -
Car06g00545 809 SUPERFAMILY Nucleic acid-binding proteins 612 716 IPR012340 -
Car06g00545 809 MobiDBLite consensus disorder prediction 172 198 - -
Car06g00545 809 ProSiteProfiles S1 domain profile. 625 693 IPR003029 GO:0003676
Car06g00545 809 MobiDBLite consensus disorder prediction 173 190 - -
Car06g00545 809 MobiDBLite consensus disorder prediction 249 299 - -
Car06g00545 809 Gene3D - 605 696 IPR012340 -
Car06g00545 809 MobiDBLite consensus disorder prediction 256 271 - -
Car06g00545 809 MobiDBLite consensus disorder prediction 417 443 - -
Car06g00545 809 SMART S1_6 623 693 IPR022967 -
Car06g00545 809 SMART S1_6 465 604 IPR022967 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00545 - - mtr:MTR_8g097290 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00545 06 5519132 5525880 Car06g00545 06 5519132 5525880 ECH