Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00531 ATGAGAGAAATCCTCCACATACAAGCAGGACAATGTGGAAACCAAATAGGAGGAAAGTTTTGGGAGGTAATGTGTGATGAACATGGGATAGATACAACAGGAAGTTATATAGGAAACTCTCATCTTCAACTAGAGAGAGTGAATGTATATTACAATGAAGCAAGCGGTGGAAGATATGTTCCAAGAGCTGTTTTAATGGACCTTGAACCAGGTACCATGGACAGTTTGCGTTCTGCTCCTTATGGAAAAATATTTAGGCCTGATAACTTTGTTTTTggacaaaatggtgctggtaataattgggctaagggacattatactgaaggagctgaacttattgattctgttcttgatgttgttcgtaaagaagctgagagttgtgattgcttgcaaggtttccaaatatgtcattcactgggaggtggaactgggtcaggaatgggaactctgctgatctcaaagataagagaagagtatccagataggatgatgttgactttctcagtgttcccttctcctaaggtctctgatactgtggtggaaccttataatgcaactctctctgttcatcaactagttgagaatgcagatgaatgcatggttcttgacaatgaagcactctatgatatctgtttcagaacactcaagctcactaatccaagttttggtgatttgaaccatttgatatcaacaacaatgagtggagtgacttgttgcttacgtttccctggacaactaaactcagatcttagaaaactagcagttaacctcattcctttcccacgtctccattttttcatggttggttttgctccattaacttcaagaggttcacaacaatacagttccctaacaattccagaactcacacaacaaatgtgggacgcaagaaacatgatgtgtgcggcagatccacgacatggcagatacttaacagcatctgcaatgttccgtggaaaaatgagcactaaagaagttgatcaacagatgattaatgttcagaacaaaaactcctcttacttcgtcgagtggatacccaacaatgttaaatccagtgtttgtgatattccccctacaggtttgtccatgagttccacattcatggggaattctacttctattcaggaaatgttccggcgtgtttcggaacagttcactgttatgtttaagagaaaggcttttttgcattggtatactgctgaaggtatggatgaaatggagtttactgaggctgagagtaatatgaatgatttggttgctgaatatcaacaatatcaagatgctgctgctcttgaagaagaagaaggtgattttgatgaTCAAGAACAGGAACACGATATCGCCTAG 1347 0.0891 MREILHIQAGQCGNQIGGKFWEVMCDEHGIDTTGSYIGNSHLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRSAPYGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSSLTIPELTQQMWDARNMMCAADPRHGRYLTASAMFRGKMSTKEVDQQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTAEGMDEMEFTEAESNMNDLVAEYQQYQDAAALEEEEGDFDDQEQEHDIA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00531 448 PRINTS Beta-tubulin signature 41 58 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g00531 448 PRINTS Beta-tubulin signature 88 99 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g00531 448 PRINTS Beta-tubulin signature 108 126 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g00531 448 PRINTS Beta-tubulin signature 152 164 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g00531 448 PRINTS Beta-tubulin signature 212 224 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g00531 448 PRINTS Beta-tubulin signature 230 239 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g00531 448 PRINTS Beta-tubulin signature 245 258 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g00531 448 PRINTS Beta-tubulin signature 265 281 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g00531 448 PRINTS Beta-tubulin signature 311 329 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g00531 448 PRINTS Beta-tubulin signature 329 343 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g00531 448 PRINTS Beta-tubulin signature 347 370 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g00531 448 PRINTS Beta-tubulin signature 377 388 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g00531 448 PRINTS Beta-tubulin signature 412 430 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Car06g00531 448 Gene3D - 263 373 IPR037103 -
Car06g00531 448 Pfam Tubulin C-terminal domain 261 382 IPR018316 -
Car06g00531 448 SUPERFAMILY Tubulin C-terminal domain-like 244 428 IPR008280 -
Car06g00531 448 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 243 IPR036525 -
Car06g00531 448 PANTHER TUBULIN 1 443 IPR000217 GO:0005874|GO:0007017
Car06g00531 448 Gene3D Helix hairpin bin 374 429 IPR023123 -
Car06g00531 448 SMART Tubulin_C_4 246 383 IPR018316 -
Car06g00531 448 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 140 146 IPR017975 GO:0005525|GO:0005874|GO:0007017
Car06g00531 448 Pfam Tubulin/FtsZ family, GTPase domain 3 211 IPR003008 GO:0005525
Car06g00531 448 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Car06g00531 448 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874|GO:0007017
Car06g00531 448 PRINTS Tubulin signature 93 104 IPR000217 GO:0005874|GO:0007017
Car06g00531 448 PRINTS Tubulin signature 106 130 IPR000217 GO:0005874|GO:0007017
Car06g00531 448 PRINTS Tubulin signature 132 150 IPR000217 GO:0005874|GO:0007017
Car06g00531 448 PRINTS Tubulin signature 151 172 IPR000217 GO:0005874|GO:0007017
Car06g00531 448 PRINTS Tubulin signature 176 189 IPR000217 GO:0005874|GO:0007017
Car06g00531 448 PRINTS Tubulin signature 190 210 IPR000217 GO:0005874|GO:0007017
Car06g00531 448 PRINTS Tubulin signature 370 398 IPR000217 GO:0005874|GO:0007017
Car06g00531 448 PANTHER TUBULIN BETA CHAIN 1 443 - -
Car06g00531 448 SMART Tubulin_4 47 244 IPR003008 GO:0005525
Car06g00531 448 Coils Coil 408 435 - -
Car06g00531 448 MobiDBLite consensus disorder prediction 429 448 - -
Car06g00531 448 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Car06g00531 448 Gene3D Tubulin/FtsZ, GTPase domain 1 262 IPR036525 -
Car06g00531 448 CDD beta_tubulin 2 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00531 Car-Chr6 5413415 5416297 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00531 K07375 - gmx:100797652 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00531 06 5413415 5416297 Car06g00531 06 5413415 5416297 ECH