Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00521 ATGGCTTTGCCATTTCTCACTCTTCCAAACTTTGTTTGTTCTCCTAAATTTAAACCCAATTCCATCATAACCGTTAAACCCAACCACTTCCTTATTCCTTCTACAACTCCCTTTTCTTACCCCTTACTTCCTCTTCGACCTCCAGCTGCTATTGGACCCGATGCCAAATTCTATCCAAACCCAGCCGACGACGACCCACCCGAAGTAGCCGAAGATTCTGCTCACGGCTTCTCCAAATACCAACAAATTCAACTCCAAGCCGACCGCGCACGCCAACGCGAAGAACAAGATTTCAAAAACAACCAAGCCACTTACTTAGCCGCCATTGCCGACGCCGAAGATGCTCCGGATAACCCTTCCTCTATCGATTCCGCCGAAGACGATTTGTTCGGCGAAATTGATAAAGCTATCGCTCTCAAACGGAAAGAGTTCGTTAAACAAGGACTTCTTAACCCTAATCCATCGAAAAAGGAAATTGAAGTGCTCGTTGAAGACGAGCTTCAACCCGATGAAGCAACCGATGTTGAAGAAATCGAACGACTCCGAGGACTCACCGTGAATTCTGATGAATCTTCGGGAGATTTCGAAGACGCTAATTTATCTTCGGAATCTTCGTTTGATTTAGATTTAGAGACTTTAGGGAAAAGTAAAACTAGAATAATTGAACCTAAGTTTAAGATGAGTTTAGCTGAACTTTTGGATGAGAGCAAAGTTGTTCCTGTTTCCGTTTATGGAAATTTGGAAGTTGAAATAAGCGGAATTCAACATGATTCGAGGCTTGTAACTTCTGGTAATTTGTTTGTCTGTTGTGTTGGTAGAAAAAATGATGGACACATGTTTTTGAGTGAAGCTGATAAGAGAGGTGCTATTGCGGTTGTAGCGAGTAAAGAGATTGATATTGAAGACACTTTGGGTTGTAAAGCTTTGGTTATTGTGGAAGATACTAATGCTGTTCTTCCTACGTTGGCTGCTTCGTTTTTCAAGTACCCTTCGAAAAACATGGCTCTTATTGGGATAACTGGGACTTATGGTAAAACGACTACCACCTATTTGATAAAAAGTATGTATGAAGCCATGGGTTTACGCACCGGGATGTTGAACTCTATTGCTAGTTATGTTCATGGGGATAATCAGTTGGATTCTCCTTACGCTATGTTGGATGCTGTTTTGGTTCAGAATTTGATGGCTAAGATGCTTCATAATGGAACTGAAGCTGTGGTTTTTGAGGCTTCTTCTCGTGGATTGTCTCAGGGAAAATATGATGAGGTTGATTTTGATGTTGCTGTATTTACTAATTTGATGAGTGAGGAAGAGGGGGAGGAGGATAGAGATGCGAAGGCTAAGGTGTTTTCGAGGATGGTGGATCCTGAGCGGCATAGGAAAGTTGTTAACATTGATGATCCGAATGCGGCTTTGTTTGTTTCAATGGGGAGTCCTGAAGTTCCTGTTGTGACATTTGCTTTGGAGAATAAAAATGCAGATGTTCATCCCTTGAAGTTTGAACTTTCCCTGTTTGAGACACAGGTATTGGTGAATACACCTGCTGGGATACTGGAAATTTCGTCGGGTTTACTAGGAAGGCACAACGTTTACAACATACTTGCTGCTGTGGCGGTTGGCATTGCTGTTGGGGCACCTTTGGAGGATATTGTTAGAGGTATTGAAGAAGTAGATGCAGTTCCTGGGAGGTGCGAGTTAATCGACGAGGAACAAGCATTTGGGGTAATAGTTGACTATGCTCGTACTCCTGATGCTTTGTCTAGATTACTTGATTCTGTAAGAGAGCTTCAACCTCGCAGGATTATAACTGTGATCGGTTGTTGTGGCGAGGACGAAAGGGGGAAGAGACCCCTGATGACCAAGATAGCAACAGATAAAAGTGAAGTGACCATGCTGACATCTGACAATCCCAAGAGTGAAGATCCATTGGATATTTTGGATGATATGTTGGCTGGGGTAGGATGGACAATGCAAGAGTACCTGAAATATGGAGAGAATGACTACTATCCTCCTCTTCCAAATGGTCATAGGCTTTTTCTCCATGACATTAGGAGGGTAGCTGTGCGTGCTGCAGTTGCAATGGGGGAGGAGGGTGATGTTGTTGTGATTGCTGGCAAAGGACACGAAACAAGTCAAATAGAAGGTGATAAGAAGGATTTCTTTGATGACCGAGAAGAGTGCCGGGAGGCATTGCAGTACGTGGACGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCGGTTACCAGAGAGTCACTGA 2268 0.4334 MALPFLTLPNFVCSPKFKPNSIITVKPNHFLIPSTTPFSYPLLPLRPPAAIGPDAKFYPNPADDDPPEVAEDSAHGFSKYQQIQLQADRARQREEQDFKNNQATYLAAIADAEDAPDNPSSIDSAEDDLFGEIDKAIALKRKEFVKQGLLNPNPSKKEIEVLVEDELQPDEATDVEEIERLRGLTVNSDESSGDFEDANLSSESSFDLDLETLGKSKTRIIEPKFKMSLAELLDESKVVPVSVYGNLEVEISGIQHDSRLVTSGNLFVCCVGRKNDGHMFLSEADKRGAIAVVASKEIDIEDTLGCKALVIVEDTNAVLPTLAASFFKYPSKNMALIGITGTYGKTTTTYLIKSMYEAMGLRTGMLNSIASYVHGDNQLDSPYAMLDAVLVQNLMAKMLHNGTEAVVFEASSRGLSQGKYDEVDFDVAVFTNLMSEEEGEEDRDAKAKVFSRMVDPERHRKVVNIDDPNAALFVSMGSPEVPVVTFALENKNADVHPLKFELSLFETQVLVNTPAGILEISSGLLGRHNVYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYARTPDALSRLLDSVRELQPRRIITVIGCCGEDERGKRPLMTKIATDKSEVTMLTSDNPKSEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDVVVIAGKGHETSQIEGDKKDFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00521 755 TIGRFAM murE: UDP-N-acetylmuramyl-tripeptide synthetase 249 732 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Car06g00521 755 PANTHER MUR LIGASE FAMILY MEMBER 205 745 - -
Car06g00521 755 Gene3D - 228 328 - -
Car06g00521 755 Gene3D - 565 742 IPR036615 GO:0009058|GO:0016881
Car06g00521 755 SUPERFAMILY MurE/MurF N-terminal domain 227 330 IPR035911 -
Car06g00521 755 Gene3D - 330 563 IPR036565 GO:0005524|GO:0009058
Car06g00521 755 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 560 732 IPR036615 GO:0009058|GO:0016881
Car06g00521 755 PANTHER UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE MURE HOMOLOG, CHLOROPLASTIC 205 745 - -
Car06g00521 755 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 227 731 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Car06g00521 755 Pfam Mur ligase middle domain 339 539 IPR013221 GO:0005524|GO:0009058|GO:0016881
Car06g00521 755 Pfam Mur ligase family, catalytic domain 250 325 IPR000713 GO:0009058|GO:0016881
Car06g00521 755 Pfam Mur ligase family, glutamate ligase domain 560 643 IPR004101 GO:0009058|GO:0016881
Car06g00521 755 SUPERFAMILY MurD-like peptide ligases, catalytic domain 330 557 IPR036565 GO:0005524|GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00521 Car-Chr6 5307517 5311026 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00521 - - mtr:MTR_8g098345 1283.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00521 06 5307517 5311026 Car06g00521 06 5307517 5311026 ECH