Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00500 ATGGAAGTGTTATTGTTATTTCTAGCTGTATTTGTTGCATTGACAAGCTTGAATGTAGTAGAGAGCCGCAAAACTCCAGTTCTGGAATATTTTGAGTATTGTGCTGTGAACTGCAGAGCTTACAGTGCCTCATTGACGGATTTCGGTGGCGTTGGAGATGGAGAAACTTTGAACACAAAAGCTTTTCAGACAGCTATAGATCATTTGAGTCAGTACTCATCAAATGGTGGTTCACAGCTTTATGTTCCACCTGGAAGATGGTTGACTGGTAGTTTCAATGTCACCAGCCATTTCACTTTGTTCATCCACAAAGATGCTGTCATTCTTGGCTCTCAGGATGAAAATGATTGGCCAGTGATTGATCCCTTGCCATCTTATGGTAGAGGGAGGGACACCCAGGGTGGAAGGTTTAGGAGTCTCATTTTTGGAACCAACCTTACAGATGTAATCATAACAGGGGACAACGGTACACTAGATGGACAAGGTGAACTGTGGTGGCAAAAGTTTCACCATGGGCAGCTTAGTTATACCAGACCTTACCTAATTGAAATCATGTATTCAGATAATATTCAGATATCCAATCTCACTTTGGTTAATTCTCCCTCCTGGAATGTCCATCCTGTTTACAGCAGCAACGTTATTGTTCAAGGAATCACAATTCTTGCGCCCGTGAACTCGCCAAATACAGATGGAATCAACCCTGACTCTTGCACGAACACACGAATTGAGGACTGTTATATAGTGTCAGGGGACGATTGTGTGGCTGTGAAGAGTGGTTGGGATGAGTATGGTATAGCTTATGGAATGCCAACGAAGCAACTGGTAATCAGAAGGCTCACTTGTATTTCTCCAACGAGTGCCGTGATTGCTTTAGGGAGTGAAATGTCTGGTGGAATCGAAGATGTGAGGGCTGAGGACATTGTAGCCATCAATTCAGAATCAGGAGTCAGGATCAAAACTGCTGTTGGAAGAGGAGGTTATGTCAAGGACATATATGTTAGAAGAATGACTATGAAAACTATGAAATGGGCATTTTGGATGACAGGAGATTATGGTTCTCATGCTGATAACAACTACGATCCTAATGCACTTCCTGTGGTTCAGAACGTTAATTATCGCGACATGGTTGCTGATAATGTGACTATGGCAGCAAAATTAGAGGGTATATCTAATGCACCATTTACTGGAATCTGCATATCCAATGTAACCATTGGACTAGCAAAGAAGGCTAAAAAAGTTCCATGGAATTGTACTGATATTGCTGGGATTTCGAGTGGTGTGACTCCTTCCCCGTGTGATCTATTGCCAGACCAAGGAGTGCAGAAAATAGGGGCATGTACCTTCCCAGAAGACAATTTGCCGATTGAAGATATCAAGGTGGTTTAG 1386 0.4257 MEVLLLFLAVFVALTSLNVVESRKTPVLEYFEYCAVNCRAYSASLTDFGGVGDGETLNTKAFQTAIDHLSQYSSNGGSQLYVPPGRWLTGSFNVTSHFTLFIHKDAVILGSQDENDWPVIDPLPSYGRGRDTQGGRFRSLIFGTNLTDVIITGDNGTLDGQGELWWQKFHHGQLSYTRPYLIEIMYSDNIQISNLTLVNSPSWNVHPVYSSNVIVQGITILAPVNSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPTSAVIALGSEMSGGIEDVRAEDIVAINSESGVRIKTAVGRGGYVKDIYVRRMTMKTMKWAFWMTGDYGSHADNNYDPNALPVVQNVNYRDMVADNVTMAAKLEGISNAPFTGICISNVTIGLAKKAKKVPWNCTDIAGISSGVTPSPCDLLPDQGVQKIGACTFPEDNLPIEDIKVV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00500 461 PANTHER PECTIN LYASE-RELATED 5 460 - -
Car06g00500 461 SUPERFAMILY Pectin lyase-like 35 435 IPR011050 -
Car06g00500 461 Gene3D - 32 424 IPR012334 -
Car06g00500 461 Pfam Glycosyl hydrolases family 28 134 412 IPR000743 GO:0004650|GO:0005975
Car06g00500 461 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 5 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00500 Car-Chr6 5035848 5038548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00500 29 460 Glycoside Hydrolase AT4G23500 74.306 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00500 - - gmx:100785841 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00500 06 5035848 5038548 Car06g00500 06 5035848 5038548 ECH