Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00440 ATGATTCTAAACGTATCCACTCCTTCCTTCTCTCGCTTACTTCCTCTCCATTCTTCTTCTTTTGCTCTGTTGAAACTATCTGAAACCTATTCCAACCACACTGCAACCACCAATCCCCTTCTCTTGTTCCCCTCAAAACCACCGAGGTTCCTCAACGTCAAAGCTTCTATCAGCGAAAGCCAAAATGAAACCTCCAATTCCAACCTATTGGATCAACAGCTTCTTCTCCGACTTGCCGCCGCCGCCAAAGACGCTGACGAAGCATTGCAGATAATCGCCGATAATTCTTCCACTAACGCCGGCGTCGTTTCCAATTCTGATTGTTGCACTATTATATCCGCTGCTCTTGATCGGAATAATCCCCAACTTGCTTTGTCCGTTTTCTATGCCATGCGCTCCACTTTTCATGAAGTTGGTGAGAGTGGTTCTTTAGTAGTTGAGAGATGGAAGTGGTCAAGGCCAAATGCACGTGTTTATACATTGTTGATTCAGGGTTTGGCGTCTTCTTTGAGGGTTTCTGATGCTCTTAGCGTGATTAAATATATCTGTGAGGTGGGCGTGTCTCCTTCTGAGGAGGTCCCCTTTGGGAAGATAGTTAGGTGTCCTAGTTGTCAGATAGCTGTTGCAGTTGCACAGCCACAGCAAGGTATTCAGATAGTGTCTTGTGCAAAATGTCGCTACCAATACGAACTTGTTTCGGGAAACATAGTCGGTATTCAATCAGAAGAAATCAGCATGGACGTTACAGCATGGGAAAAGGGGTTAAGATTCCTGAAATTGATGAAGCAAAGCATTCCTTCTGCTGTTCACTCTATTGTGGTGCAGACACCTTCTGGTATGGCTCGTACTCACAGATTTGCAACTGAGACAGTAGACCTGCCAGCACAAGAAGGCGAAAGGGTAACTGTTGCTGTGGCAGCTCCATCAAATGTATATAGAAAGCTAGGGCCCTTTAAAGTCAGTTCAAGGACCCCAGATTTCTATCCTGGTGAGGCTATGTGCATAACAAACCACAAAGATGGACGGGAATCACGCCTTGTAAGAGCCCCTAGAAAAGATGAAAGTTCATCATTACTTAAACCCTCCATCCTCTTTCCACTTCTTGCTTTGTTTGCCACCGGTGATGCTGCCTCTGGATTTATTGACCCCAGCCTGCCTCAATTCCTATCAGTTGTTGCAGTTTCATCACTTGCTGTTGGCTCTGCATTGAATTCCTTTGTTTTACCCCAGTTTAATCAGCTTCCGCAAGGGTCGGTGGAAGTAATTGCTATCAAACAGCGTCTTTTATCTCAATATGACGTGCTTCAGTCTCGCATCAATGACCTAAAAGAAGCTGCTGAAAAAGAGGTTTGGATGTTAGCCCGGATGTGCCAACTTGAGAATAAAATTTCAGCTGTTGGAGAACCTTCTTATCGGACTCGAAGAAGTAAAGTCAAAAGGGTCCGAGAGAGCCTGCAAAACTCCCTCCGCGGACGAATTGAATTGATAGCTAGCTATGCTAGGATTTCCTCAATGATTGAAATTGAAGTGGAGATGGAAACTGATGTTCTTGCTGCTGAAACTACTACTGATGTGGATGGTATCACAGAACAGATAGAGCAAATCATGGAACTTGAAAAATTAGAGGAGAGATGGAAAATGCAAGCAGAAGCAAATGATGAGGCCGAAAGACTTCTTAGTTCCCAGCCTGTGCCTTTGGACGAAGTTTAA 1710 0.4462 MILNVSTPSFSRLLPLHSSSFALLKLSETYSNHTATTNPLLLFPSKPPRFLNVKASISESQNETSNSNLLDQQLLLRLAAAAKDADEALQIIADNSSTNAGVVSNSDCCTIISAALDRNNPQLALSVFYAMRSTFHEVGESGSLVVERWKWSRPNARVYTLLIQGLASSLRVSDALSVIKYICEVGVSPSEEVPFGKIVRCPSCQIAVAVAQPQQGIQIVSCAKCRYQYELVSGNIVGIQSEEISMDVTAWEKGLRFLKLMKQSIPSAVHSIVVQTPSGMARTHRFATETVDLPAQEGERVTVAVAAPSNVYRKLGPFKVSSRTPDFYPGEAMCITNHKDGRESRLVRAPRKDESSSLLKPSILFPLLALFATGDAASGFIDPSLPQFLSVVAVSSLAVGSALNSFVLPQFNQLPQGSVEVIAIKQRLLSQYDVLQSRINDLKEAAEKEVWMLARMCQLENKISAVGEPSYRTRRSKVKRVRESLQNSLRGRIELIASYARISSMIEIEVEMETDVLAAETTTDVDGITEQIEQIMELEKLEERWKMQAEANDEAERLLSSQPVPLDEV 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00440 569 Coils Coil 425 445 - -
Car06g00440 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Car06g00440 569 Coils Coil 538 558 - -
Car06g00440 569 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 568 - -
Car06g00440 569 Gene3D Tetratricopeptide repeat domain 72 267 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00440 - - gmx:100781803 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00440 06 4507639 4513574 Car06g00440 06 4507639 4513574 ECH