Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00421 AtggcatgcattggcattggcattggtattgCAGTTACATGCCCTTTGGTGAGAAAGAAAGTGTCAAGAAAGAGTAATGAAGGGGTGAGATTGGTGGAAAGAAGAGTAATAAAGAGCATGAGTAATCCAATAAAAGTAGCTCCTAAAAGAGAGAAAGATCCAAAAAAGAGAATAGTAATAACAGGAATGGGTGTTGTGTCGGTATTTGGAAATGAAATAGATACATTTTACAACAAACTTCTAGAAGGAGAAAGTGGAATAAACTTTATAGATAGGTTTGATGTGTCAACATTCCCAGTACGTTTTGCTGGACAGATAAGGAATTTCAGTTCAGAAGGTTACATTGATGAGAAGAATGGGAAGATGAACCTAGATGATTGTTGGAGGTATTATTTAGTAGCAGGTAAGAAGGCACTTGAAGATGCAAAACTTGGAAGTGAAGTCCTTGAAAAGATGGACAAAACAAGAATAGGAGTTCTAGTGGGATCAGGAATGGGAGGTACATCCTCAATGAGCAAAGCTGTAGAAGCACTAATAGAAAAGGGTCATAAAAAAATAACAGAATATTTCATACCATTTTTCCTACCAAACATGGGTTCAGCATTGTTGGCTATGGAGAGAGGGTTAATGGGACCAAATTATTCAATATCAAGTGCATGTGCATCAGCAAATTATTGCTTTCATGCAGCTTCAAATCACATTAGAAGAGGTGAAACAGATATTATGGTTGTTGGTGGTACTGAATCAATAATACCTGCTACTGTTGGTGGATTTATTGCTTGCAGGGCTTTGTCTCAAAGGAATCAAAATCCCAAAATGGCTTCAAGACCATGGGACATACATCGTGATGGTTTTGTCATGGGTGAAGGCTCTGGTGTTCTGATAATGGAGAGCTTGGAGAGTGCAACAAAGAGGGGAGCCAAAATAATTGCTGAATATTTGGGTGGTGCCATAACATGTGATGCTCATCACATGACTGATCCAAGATCTGATGGATTTGGAGTTGCATCTTGCATAAGGAATAGTTTAGCTGATGCTGGAGTTTCCCCTGAAGAGGTGAACTATTTGAATGCTCACGCCACATCAACACTAGCCGGTGACTTAGCTGAGATTTGTGCAATCAAAAAGGTTTTTAAGGATACATCAGAATTGAAAATGAATGCCACTAAGTCAATGACTGGTCATGGTCTTGGAGCTGCTGGTGCTTTAGAAGCAATAGTGACCATAAAAGCAATAACAACTGGCTGGTTGCATCCAACCATTAACCAAGATAATTTGGAGGAGGAAGTTACAATTGATACCGTCCCGGGTGTTAAGAAGAAGCATGAAGTTAACGTTGCTATCTCTAACTCATTTGGATTTGGTGGACACAATTCAGTAGTTGTCTTCGCCCCATTCATGCCCTAA 1407 0.3852 MACIGIGIGIAVTCPLVRKKVSRKSNEGVRLVERRVIKSMSNPIKVAPKREKDPKKRIVITGMGVVSVFGNEIDTFYNKLLEGESGINFIDRFDVSTFPVRFAGQIRNFSSEGYIDEKNGKMNLDDCWRYYLVAGKKALEDAKLGSEVLEKMDKTRIGVLVGSGMGGTSSMSKAVEALIEKGHKKITEYFIPFFLPNMGSALLAMERGLMGPNYSISSACASANYCFHAASNHIRRGETDIMVVGGTESIIPATVGGFIACRALSQRNQNPKMASRPWDIHRDGFVMGEGSGVLIMESLESATKRGAKIIAEYLGGAITCDAHHMTDPRSDGFGVASCIRNSLADAGVSPEEVNYLNAHATSTLAGDLAEICAIKKVFKDTSELKMNATKSMTGHGLGAAGALEAIVTIKAITTGWLHPTINQDNLEEEVTIDTVPGVKKKHEVNVAISNSFGFGGHNSVVVFAPFMP 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00421 468 TIGRFAM fabF: beta-ketoacyl-acyl-carrier-protein synthase II 56 463 IPR017568 GO:0006633|GO:0016747
Car06g00421 468 CDD KAS_I_II 56 463 IPR000794 -
Car06g00421 468 Pfam Beta-ketoacyl synthase, N-terminal domain 56 302 IPR014030 -
Car06g00421 468 Gene3D - 19 467 IPR016039 GO:0016746
Car06g00421 468 SUPERFAMILY Thiolase-like 56 307 IPR016039 GO:0016746
Car06g00421 468 PANTHER 3-OXOACYL-(ACYL CARRIER) SYNTHASE II 24 468 - -
Car06g00421 468 Pfam Beta-ketoacyl synthase, C-terminal domain 311 423 IPR014031 -
Car06g00421 468 PANTHER POLYKETIDE SYNTHASE-RELATED 24 468 IPR000794 -
Car06g00421 468 SUPERFAMILY Thiolase-like 270 464 IPR016039 GO:0016746
Car06g00421 468 ProSitePatterns Beta-ketoacyl synthases active site. 211 227 IPR018201 GO:0004315|GO:0006633
Car06g00421 468 SMART Beta-ketoacyl synthase 58 468 IPR020841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00421 Car-Chr6 4369861 4374197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00421 29 468 Acyl Lipid Metabolism Gene Families AT5G46290 66.958 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00421 K09458 - gmx:100798044 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00421 06 4369861 4374197 Car06g00421 06 4369861 4374197 ECH