Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00416 ATGCCTGGTCTTGTATCCCCAGGTGGACCTCCGCCCCGAATCACCCTACCCGATACTCCCACTCAAAGATCCGAATCAGCAAACACCACTACCAAAActccatctccatcaccactcccaaaaaaaccaccctctccttccccatctTCCCGTTCCAAAAAAAAGACCCCCGAAACTCCAACCAACACTTTTCTCTCCGAGTCCTCACTCGATAACCCAGATCTAGGCCCATTCCTCCTCAAAGTAGCCCGCGACACTATCGCTTCAGGCGATGGGCCCGCTAAAGCCCTCGACTACGCTATCCGAGCCTCCAAATCATTCGAACGCTGCGCCGTCGAAGGTGAGCCCAGTCTCGATTTAGCCATGAGCCTCCACGTCTTAGCCGCTATTTACTGTAGCCTAGGTCGATTTGAAGAAGCCGTTCCCGTTCTCGATCGCGCGATTCATGTTCCCGATATTGAACGTGGCGCTGATCACGCTCTCGCTGCTTTCTCCGGTTATATGCAGTTAGGTGACACTTTTTCAATGCTAGGTCAAGTTGATAAATCAATTTCTTGCTACGATCAAGGTCTTCAAATCCAGATCCAAACCCTAGGTGAAACCGATCCACGTGTCGGTGAAACGTGCCGGTACTTGGCGGAGGCTAATGTTCAAGCGATGCAGTTTGATAAAGCGGAGGAGCTCTGTAACAAAACCCTAGAAATTCATCGCGCTCATAGCGAACCTGCTTCTCTTGAAGAAGCCGCAGATCGGAGGCTTATGGCTTTGATTTGCGAGGCTAAAGGAGATTACGAGTCGGCTTTGGAGCATCTTGTTCTTGCGAGTATGGCGATGATCGCGAACGGTCAGGATAATGAAGTTGCTTCGATTGATGTAAGCATTGGAAACATTTACATGTCGCTGTGTCGATTCGACGAAGCAATTTTTTCGTATCAGAAAGCGCTGACAGTTTTTAAATCTTCAAAAGGCGAAAATCATCCTTCGGTTGCTTCGGTGTTTGTTCGATTAGCGGATTTGTATCATAGGACAGGGAAGCTTCGTGAATCAAAATCTTATTGCGAAAACGCTCTTAGAATATACTCGAAACCGGTGCCAGGGACCACCGCGGAGGAGATTGCTGGTGGATTGACGGAAGTTTCGGCGATATTTGAATCTGTTGATGATCCGGAAGAGGCTTTGAAGCTGCTGCAGAAGGCGATGAAATTGTTGGAGGATAAACCTGGACAGCAGAGTACCATTGCGGGGATAGAAGCGCGAATGGGAGTGATGTATTACATGGTTGGGAAGTACGATGAAGCGAGAAGCGCTTTTGAGAGTGCTGTTTCGAAACTGAGAAGCAGTGGGGAAAGGAAATCTGCATTTTTTGGCGTTGTTTTGAACCAGATGGGGTTAGCATGTGTGCAACTGTTTAAGATTGATGAAGCTGCTGAGTTGTTTGAGGAAGCTAGAGGAATTCTTGAACAAGAATGTGGCAATTGTCATCAAGATACTCTTGGAGTTTATAGCAATCTTGCAGCAACTTATGATGCAATGGGAAGAGTTGGAGATGCAATTGAAATTTTAGAGTATGTACTGAAATTGAGGGAAGAGAAGCTTGGAATAGCAAATCCTGATTTTGAAGATGAGAAGCGTCGTTTGGCTGAGCTGCTGAAAGAAGCTGGGAAGACAAGAGACAGAAAAGCCAAATCTTTGGAAAATCTTATTGATCCAAATTCAAAGAGGACAAAGAAGGAGGGTACTAAGAGATGGCCTGGTTTGGGGTTTAGAATTTAA 1773 0.4512 MPGLVSPGGPPPRITLPDTPTQRSESANTTTKTPSPSPLPKKPPSPSPSSRSKKKTPETPTNTFLSESSLDNPDLGPFLLKVARDTIASGDGPAKALDYAIRASKSFERCAVEGEPSLDLAMSLHVLAAIYCSLGRFEEAVPVLDRAIHVPDIERGADHALAAFSGYMQLGDTFSMLGQVDKSISCYDQGLQIQIQTLGETDPRVGETCRYLAEANVQAMQFDKAEELCNKTLEIHRAHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSSKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEIAGGLTEVSAIFESVDDPEEALKLLQKAMKLLEDKPGQQSTIAGIEARMGVMYYMVGKYDEARSAFESAVSKLRSSGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGNCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPNSKRTKKEGTKRWPGLGFRI 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00416 590 Gene3D Tetratricopeptide repeat domain 86 275 IPR011990 GO:0005515
Car06g00416 590 MobiDBLite consensus disorder prediction 18 35 - -
Car06g00416 590 Pfam MalT-like TPR region 125 274 IPR041617 -
Car06g00416 590 ProSiteProfiles TPR repeat profile. 414 447 IPR019734 GO:0005515
Car06g00416 590 SUPERFAMILY TPR-like 415 556 IPR011990 GO:0005515
Car06g00416 590 MobiDBLite consensus disorder prediction 1 70 - -
Car06g00416 590 MobiDBLite consensus disorder prediction 555 590 - -
Car06g00416 590 ProSiteProfiles TPR repeat profile. 288 321 IPR019734 GO:0005515
Car06g00416 590 Gene3D Tetratricopeptide repeat domain 276 455 IPR011990 GO:0005515
Car06g00416 590 Gene3D Tetratricopeptide repeat domain 456 575 IPR011990 GO:0005515
Car06g00416 590 PANTHER - 13 589 - -
Car06g00416 590 MobiDBLite consensus disorder prediction 49 70 - -
Car06g00416 590 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 13 589 - -
Car06g00416 590 MobiDBLite consensus disorder prediction 555 584 - -
Car06g00416 590 MobiDBLite consensus disorder prediction 1 17 - -
Car06g00416 590 SUPERFAMILY TPR-like 163 361 IPR011990 GO:0005515
Car06g00416 590 Pfam Tetratricopeptide repeat 287 361 - -
Car06g00416 590 Pfam Tetratricopeptide repeat 458 530 - -
Car06g00416 590 Coils Coil 539 559 - -
Car06g00416 590 SMART tpr_5 414 447 IPR019734 GO:0005515
Car06g00416 590 SMART tpr_5 248 281 IPR019734 GO:0005515
Car06g00416 590 SMART tpr_5 456 489 IPR019734 GO:0005515
Car06g00416 590 SMART tpr_5 164 197 IPR019734 GO:0005515
Car06g00416 590 SMART tpr_5 288 321 IPR019734 GO:0005515
Car06g00416 590 SMART tpr_5 498 531 IPR019734 GO:0005515
Car06g00416 590 SMART tpr_5 330 363 IPR019734 GO:0005515
Car06g00416 590 SMART tpr_5 373 406 IPR019734 GO:0005515
Car06g00416 590 SMART tpr_5 121 154 IPR019734 GO:0005515
Car06g00416 590 SMART tpr_5 206 239 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00416 Car-Chr6 4336956 4339706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00416 121 333 Glycosyltransferase AT3G04240 24.107 3.62e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00416 - - gmx:100815100 996.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00416 06 4336956 4339706 Car06g00416 06 4336956 4339706 ECH