Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00273 ATGGCTCCAAAGTTGGTGAAATCAGGGTCATTCATTCAGAGTTTAGCTGATAAAAAAGAGAAACTTCTATCCATGAAAGGTGATGGTTATTCACAGATAGGAATTGGTTTGCAACAAGAACAAGAAGAGCAATCGAAGATGTTGAAGTTTTGGATAAGTGTGAAGCTTGTTGCTAACAAGGCATGGGAAATGGGTCGTTCTGATCCAAGGAAAATTATATTCGCTGCAAAAATGGGTCTTGCTTTGACTCTTATATCACTTTTGATTTTTCTCAAAGAACCCTTCAAAGATATGAGTCGTAATTCTGTTTGGGCTATTCTTACCGTTGTCGTCGTCTTTGAATTCAGTATAGGGGCAACTTTAAGCAAGGGGTTTAACAGAGGATTAGGAACTTTATCAGCTGGAGGACTTGCTGTAGGAATGGGAGAGTTATCAGCATTGGCTGGAGAATGGGAAGAAGTTATAATTGCTATTAGTACTTTCATTGTTGGATTTTGTATCACCTATGCAAAACTATACCCAACTATGAAGCCTTATGAATATGGTTTCCGTGTCTTCTTGATCACTTATTGCTACATCACAGTATCTGGTTACCATACGGGTGAATTTATTGACACAGCTATAAGTAGATTTTTTAACATTGCACTTGGTGCTGCTATATCTTTGGGAGTTAATATCTGTATATATCCTATTTGGGCTGGTGAAGATCTGCATAATCTTGTCATCAAAAATTTCTTGGGTGTTGCAACATCTTTGGAAGGGGTTGTCAATCATTACCTAAATTGTGTTGAGTACAAGAAGGTGCCATCCAAAATTCTTACTTACCAAGCTGCTGATGATCCAGTTTACAGTGGCTATAGATCAGCTGTTGAATCTACAAGTAACGAGGACTCTTTGATGGGATTTGCTGTGTGGGAGCCACCTCATGGTCACTACAAAATGCTTAAATATCCATGGAAGAATTATGTGAAAGTAAGTGGAGCTCTAAGGCATTGTGCATTTATGGTCATGGCCATGCATGGATGCATACTTTCTGAAATACAGGCCCCAGCTGAGAAGAGACAAGTTTTCCGCAACGAGCTTAAGAGAGTAGGTTCCGAAGGAGCAAAAGTGTTGCGCGAACTCGGAAACAAAGTCAAGAAGATGGAGAAACTGGGAAGGGGAGATTTGTTGTATGAAGTACACGAGGCTGCAGAAGAATTGCAACAAAAGATTGATAAAAAATCATACCTCCTTGTAAATTCAGAGCTCTGGGAGATCGGAAATCGTCCCAAAGAAAAAGATGATAATTCTAAAGGCCTATTTAACATGGATGAAGATAGAAAATTTCTAGAGATCAAATCTCTAAGTGAAGCTGTTCTTGATCTTAGATCAATTGAAGTTCAAAAAAGTTGGGATGGAAATACTACAAATAGTAATAACTCTACTGTGCCTGTTTCTGAAAACTTGTTCATGAAACAGATGTCTTGGCCTGCTCATGTTTACAACAAAGCAGACACCGCAGCAAAAAAGGAAGAATCAAAGACTTATGAAACTGCTAGTTCACTGTCTCTAACAACATTTACATCACTTCTGATTGAATTTGTAGCAAGACTTCAAAACCTGGTTGATTCATTTGAAGAATTGGGTGAGAAAGCTAATTTTATGGACCCTCTTGAACAACAAGGTGTGTCATATTCAAAGGAAGCTCCCAACAAAAGCTCATATTGTGAGCTCCAAACTAGAACAGTAGTATACCATTGGATTATTCATAGAAACAAGGGTAAAAATGGAAAAAACATAAGAGTCAAGGTTTCTCTTGAGTTTCTAAGCAGATTTGAGAACAAGAAAAAAGATCTTGAAGCACCCTCTTCTTTCCCAGTTCCAGAGTGGGAAAAGGGGAGAAGAGATCGCAATTCTTCGATTCACAATCTTCCAAAAATGTCTCGAATCTTCGAATACTTCGTCGTGTGTGGGATCGGACCGGAGATTCGATCCATTGACGGAACCAAAGGTTACCAAGGCACCGGTTGCATGTATTTTCCTTCTCTTCTCGATCAGTATCCACCTTCAACTCACTCTCTCTACCCTCCTCCACCTCCTCAACTTCCAACATGTGTTCTACCGGCTGGTGTTGAGTTCCATTCGTCAGGATTTGATCCAAATGATCCTTCCACATTTCCGCGGAGCTATCCGATTGTTTTGACCGAGGGTGATGGTTCAAAAATCTATGTTAGCTGCATTTCTTTCCGGGATCCTGTTTGTGAAGATATTGCAGAGGCCTACAGGATACAGGCAAATTCCTATGCTGACAAATGCATCTGTCTAGTTTCACGCTCGCCAAGTTTCAGTGTGCTAAGGAGTGCCCTAGAGGAACTGTTTGCGCTGTGTTTCTCCCCAAATGGAAGTAGCAAGCCATTATGGGATATTATAGCACATATGGTGTCCAATGTACCTTTGCCAACTCCTGGTAAGGAGCGAGTTCTGTTTGCTATTGAGAATTGTCTGCTTTCTGTAGAGGCCCCACCAAACTATGGACTTCCCCATGTTGATATATCATTCCAGCCTCTGGTGCAGTGTTTGGATGTTGACAACCTAATAAGACTTTTCACGGCAGTGCTGCTTGAGAGGAGGATTTTAATTCGGGCTAACAAGTATTCACTTCTAACTCTCGCATCAGAGGCCATTTGTCACCTAATATACCCATTCCGATGGCAGCATGTATACATTCCGTTGCTGTTTTACAGTGGAGTAGATTATATTGATGCTCCTACACCATATATGATGGGGCTCTATTCAGGTGTTGATATCTCTGCTCTGGCAATGGACGGTGTAGTTGTTGTGGACCTTGAGTATAATCGTATCACTACATCAGAGGAAATTCCACCTATTCCTGAGCCAGAACTCAGCTTTTTGCGTGGTGAGATCATGAACTTATTACAGCCCAGTGTAATTGGAATTGATCAAATGAAGGCTGGAATGTATAGTAATAGTGTATCTGAGCATTTCCCTAAATCTGGGGCTAAGCAATGGGGAGACAATCATGACCTGCAGCTAAGGATGATATTCCTAAAGTTCTTTGCAACATTTTTAAGTGGTTATCGCAATTTCCTAGAAAATAGTGCTACTCATGTCTTCAACACCCAAGCCTTTTTGAAGAAGCGGTCTCGATCTACCAACCAACCGTCAGAGCCCATGATAGCTCAGTTCCTTGACTCGCATGGTTTCATGGATTATTTGGAGAGAGGGGTAGGTTTTGATGAAAACAACAATAATGTTCTTGATAAGCTACAAGATGCAATTGGAAGGGGTCAAAACCTTATGTCAGTTTTTCCTACATCCTTGGTAGAACCTGAGATTTTAACAGTATCAGATTCTGCTGTTGGAATATCAGGATCTGGTGCCAAATACACTTATGATAGATTTCCGTCCAACATCAGAACagaagagcaagaagaaaagaggaagcagaTTCTTGCAACCATTAGTAATGCCTTTGAGTACTCAGGAAGACATGCTCCAAGCAGTAAGGATCCTTTAGCAGATAATCTTAGTCCACTCGAGAGAGCTGCTGAAAGAGAGCTTATGGTGCTGGACATTAAGGTTAAGCTGCAGGGTTTATGGCTGCGGCTTCTTAAACTGGGAGCGACAGATGATCCTCTTTCATCCTTTGAATATGGAACAATACTTGCTTTGATTGAATCTGATGCAGAGGGAATTGGTGGTAGTGGATTTGTTGAATGTATAAGGGAGCATATTCATTCTGGTTGGCACTGTCAGCTCACCGAAGAACAGTTTATTGCAGTGAAAGAGCTGCTGAAAACAGCTATCAATCGTGCAACATCGCGTAATGACCTCTTGACCATTAGAGATGCTCTTGAAGTTTCTTCTGATATGTATAAGAAAGACAGTAATAATGTGCCGGACTATGTCCAACGTCATCTTATTTCTCTATCTATTTGGGAGGAGCTACGTTTTTGGGAAGGATATTTTGACTATTTAATGGAGCAATCTTCAAACAAGTCAGCCAACTATGCATCTCTGGTGACTGCACAGCTTGTTGTGTTGGCTTCACACATGGCTGGGCTTGGACTTCCCGATAATGATGCTTGGTACATGATCGAAACAATTGCAGAGAGGAACAGTATCGGATCCAAACAATTTATAAAAATTAGAGGATTCTTGTCTCATATCCAACAACTACGTAATGGATACTGGGGGTTCACGTCAATGAAGGCACAATCGGCGCTATCACTTGCATTGCCATCTCCACATTCAAAAAATGCCAAAGATGAGGACCAGCAACCAACTGAGGCAACTGGTGTTGGTAGAAACTGGGTTCAAAGTATGTTCAGCAGAAATACAACATCTAGGTCCAGCTCATTTAGTCGCGTTCGTAGATGGACATCTGACGGAGGCAATTCAGCCACAAATGAGAATGGGACACCTCGCAAACAAGATCTATCAACTGGGGGGCAGAAGAAGCTTCAAACCAATGTTCGCATACTTAGGGGTCATAATGGTGCCATCACTGCTCTCCACTGTGTTACAAAGAGAGAAGTGTGGGATTTGGTGGGTGACCGTGAAGATGCTGGTTTCTTTATTAGTGGAAGCACAGACTGCTCAGTTAAGATATGGGACCCAAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGGCATACAAGGACTGTCCGTGCCATAAGTTCAGATAGGGGGAAGGTGGTGTCAGGATCTGATGATCATTCTGTTTTGGTGTGGGATAAGCAGACAACTCAACTTTTAGAAGAGCTTAAAGGCCATGAAGGACCGGTCAGCTGTGTACGCACGCTCTCAGGCGAACGTGTGCTAACTGCATCCCATGATGGCACTGTGAAGATGTGGGATGTAAGAACTGATAGATGTGTTGCAACTGTTGGTCGTTGCTCTAGTGCTGTTTTATGCATGGAATATGATGACAATGTGGGAATCTTGGCCGCGGCTGGAAGAGACGTGGTTGCCAACATGTGGGACATTCGTGCTAGTAAGCAGATGCATAAACTTTCAGGACATACACAATGGATAAGGTCACTAAGAATGGTTGGTGACACTGTTATTACTGGTAGTGATGATTGGACGGCAAGAATATGGTCTGTTTCACGAGGAACATGTGATGCTGTCCTAGCATGCCATGCAGGGCCAATTTTATGTGTTGAATATTCGTCGTTAGATAGAGGAATAATAACAGGGTCAACGGATGGCCTGCTGCGATTTTGGGAAAATGATGATGGAGGTATAAGGTGTGCGAAAAATGTAACAGTTCACAACGCTGCCATATTATCAATTAATGCTGGGGAGCACTGGTTAGGTATTGGAGCTGCTGATAATTCTCTTTCTCTCTTTCATCGCCCTCAAGAGAGACTTGGTAGTTTTTCTGGCCCCGGGTCCAAGATGGCTGGGTGGCAGCTTTATAGAACACCACAAAAAACAGTTGCCATGGTAAGATGTATCGCATCAGACCTGGAGAGGAAAAGGATATGCAGCGGTGGTCGTAATGGGCTTCTAAGACTATGGGATGCAACCATCAACATTTGA 5556 0.4185 MAPKLVKSGSFIQSLADKKEKLLSMKGDGYSQIGIGLQQEQEEQSKMLKFWISVKLVANKAWEMGRSDPRKIIFAAKMGLALTLISLLIFLKEPFKDMSRNSVWAILTVVVVFEFSIGATLSKGFNRGLGTLSAGGLAVGMGELSALAGEWEEVIIAISTFIVGFCITYAKLYPTMKPYEYGFRVFLITYCYITVSGYHTGEFIDTAISRFFNIALGAAISLGVNICIYPIWAGEDLHNLVIKNFLGVATSLEGVVNHYLNCVEYKKVPSKILTYQAADDPVYSGYRSAVESTSNEDSLMGFAVWEPPHGHYKMLKYPWKNYVKVSGALRHCAFMVMAMHGCILSEIQAPAEKRQVFRNELKRVGSEGAKVLRELGNKVKKMEKLGRGDLLYEVHEAAEELQQKIDKKSYLLVNSELWEIGNRPKEKDDNSKGLFNMDEDRKFLEIKSLSEAVLDLRSIEVQKSWDGNTTNSNNSTVPVSENLFMKQMSWPAHVYNKADTAAKKEESKTYETASSLSLTTFTSLLIEFVARLQNLVDSFEELGEKANFMDPLEQQGVSYSKEAPNKSSYCELQTRTVVYHWIIHRNKGKNGKNIRVKVSLEFLSRFENKKKDLEAPSSFPVPEWEKGRRDRNSSIHNLPKMSRIFEYFVVCGIGPEIRSIDGTKGYQGTGCMYFPSLLDQYPPSTHSLYPPPPPQLPTCVLPAGVEFHSSGFDPNDPSTFPRSYPIVLTEGDGSKIYVSCISFRDPVCEDIAEAYRIQANSYADKCICLVSRSPSFSVLRSALEELFALCFSPNGSSKPLWDIIAHMVSNVPLPTPGKERVLFAIENCLLSVEAPPNYGLPHVDISFQPLVQCLDVDNLIRLFTAVLLERRILIRANKYSLLTLASEAICHLIYPFRWQHVYIPLLFYSGVDYIDAPTPYMMGLYSGVDISALAMDGVVVVDLEYNRITTSEEIPPIPEPELSFLRGEIMNLLQPSVIGIDQMKAGMYSNSVSEHFPKSGAKQWGDNHDLQLRMIFLKFFATFLSGYRNFLENSATHVFNTQAFLKKRSRSTNQPSEPMIAQFLDSHGFMDYLERGVGFDENNNNVLDKLQDAIGRGQNLMSVFPTSLVEPEILTVSDSAVGISGSGAKYTYDRFPSNIRTEEQEEKRKQILATISNAFEYSGRHAPSSKDPLADNLSPLERAAERELMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWHCQLTEEQFIAVKELLKTAINRATSRNDLLTIRDALEVSSDMYKKDSNNVPDYVQRHLISLSIWEELRFWEGYFDYLMEQSSNKSANYASLVTAQLVVLASHMAGLGLPDNDAWYMIETIAERNSIGSKQFIKIRGFLSHIQQLRNGYWGFTSMKAQSALSLALPSPHSKNAKDEDQQPTEATGVGRNWVQSMFSRNTTSRSSSFSRVRRWTSDGGNSATNENGTPRKQDLSTGGQKKLQTNVRILRGHNGAITALHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSELRATLKGHTRTVRAISSDRGKVVSGSDDHSVLVWDKQTTQLLEELKGHEGPVSCVRTLSGERVLTASHDGTVKMWDVRTDRCVATVGRCSSAVLCMEYDDNVGILAAAGRDVVANMWDIRASKQMHKLSGHTQWIRSLRMVGDTVITGSDDWTARIWSVSRGTCDAVLACHAGPILCVEYSSLDRGIITGSTDGLLRFWENDDGGIRCAKNVTVHNAAILSINAGEHWLGIGAADNSLSLFHRPQERLGSFSGPGSKMAGWQLYRTPQKTVAMVRCIASDLERKRICSGGRNGLLRLWDATINI 1851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00273 1851 Pfam Aluminium activated malate transporter 62 543 IPR020966 GO:0015743
Car06g00273 1851 ProSitePatterns Trp-Asp (WD) repeats signature. 1833 1847 IPR019775 -
Car06g00273 1851 Gene3D - 1451 1667 IPR015943 GO:0005515
Car06g00273 1851 CDD WD40 1492 1788 - -
Car06g00273 1851 PRINTS G protein beta WD-40 repeat signature 1692 1706 IPR020472 -
Car06g00273 1851 PRINTS G protein beta WD-40 repeat signature 1569 1583 IPR020472 -
Car06g00273 1851 PRINTS G protein beta WD-40 repeat signature 1610 1624 IPR020472 -
Car06g00273 1851 ProSiteProfiles Tripartite DENN domain profile. 658 1084 IPR037516 -
Car06g00273 1851 Pfam uDENN domain 675 743 IPR005113 -
Car06g00273 1851 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1715 1747 - -
Car06g00273 1851 Pfam DENN (AEX-3) domain 763 944 IPR001194 -
Car06g00273 1851 ProSiteProfiles Trp-Asp (WD) repeats profile. 1522 1540 IPR001680 GO:0005515
Car06g00273 1851 SMART dDENN_cls 1008 1076 IPR005112 -
Car06g00273 1851 Gene3D - 842 1029 IPR043153 -
Car06g00273 1851 ProSiteProfiles Trp-Asp (WD) repeats profile. 1715 1747 IPR001680 GO:0005515
Car06g00273 1851 ProSiteProfiles Trp-Asp (WD) repeats profile. 1675 1714 IPR001680 GO:0005515
Car06g00273 1851 Gene3D - 1668 1851 IPR015943 GO:0005515
Car06g00273 1851 ProSiteProfiles Trp-Asp (WD) repeats profile. 1592 1632 IPR001680 GO:0005515
Car06g00273 1851 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1552 1582 - -
Car06g00273 1851 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1592 1626 - -
Car06g00273 1851 MobiDBLite consensus disorder prediction 1415 1487 - -
Car06g00273 1851 SMART uDENN_cls 641 744 IPR005113 -
Car06g00273 1851 SMART WD40_4 1752 1789 IPR001680 GO:0005515
Car06g00273 1851 SMART WD40_4 1545 1582 IPR001680 GO:0005515
Car06g00273 1851 SMART WD40_4 1626 1665 IPR001680 GO:0005515
Car06g00273 1851 SMART WD40_4 1489 1540 IPR001680 GO:0005515
Car06g00273 1851 SMART WD40_4 1708 1747 IPR001680 GO:0005515
Car06g00273 1851 SMART WD40_4 1668 1705 IPR001680 GO:0005515
Car06g00273 1851 SMART WD40_4 1807 1846 IPR001680 GO:0005515
Car06g00273 1851 SMART WD40_4 1585 1623 IPR001680 GO:0005515
Car06g00273 1851 ProSitePatterns Trp-Asp (WD) repeats signature. 1610 1624 IPR019775 -
Car06g00273 1851 ProSiteProfiles Trp-Asp (WD) repeats profile. 1552 1591 IPR001680 GO:0005515
Car06g00273 1851 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 643 1851 - -
Car06g00273 1851 SMART DENN_cls 762 946 IPR001194 -
Car06g00273 1851 Gene3D - 633 816 - -
Car06g00273 1851 PANTHER C-MYC PROMOTER BINDING PROTEIN 643 1851 - -
Car06g00273 1851 Pfam WD domain, G-beta repeat 1550 1582 IPR001680 GO:0005515
Car06g00273 1851 Pfam WD domain, G-beta repeat 1670 1705 IPR001680 GO:0005515
Car06g00273 1851 Pfam WD domain, G-beta repeat 1491 1540 IPR001680 GO:0005515
Car06g00273 1851 Pfam WD domain, G-beta repeat 1587 1623 IPR001680 GO:0005515
Car06g00273 1851 MobiDBLite consensus disorder prediction 1431 1487 - -
Car06g00273 1851 SUPERFAMILY WD40 repeat-like 1493 1753 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00273 Car-Chr6 2990667 3021795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00273 7 551 Miscellaneous Gene Families AT3G18440 61.111 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00273 - - gmx:100818305 2194.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01706 08 26911472 26916584 Car06g00273 06 2990667 3021795 ECH
Car06g00273 06 2990667 3021795 Car06g00273 06 2990667 3021795 ECH