Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00188 ATGCCACTAACGCCGATGCGAATTCGAGTACCATACTCCGGTATTTTCAGACTCGCCACTCGCCGTCCTATCCTCATACCACCAACACGCTTTTCACGTCcttctacttttacttctacttccactcccacaaccacAAACCTTCGCCTTCGCCTTTCATCCTCTTCACCCGCTTTCAGGCACAAAACCCTTGCTGTGCCCTTTTTGCATCAGCAAAGTTCCACTTACGGTCGTTTTGCATTTCGTGACGTCTCCAGTGATGACTCTGACCTCGAAATTGCTTCTTCTCACTCACATGCTCGCCCTCAACCTCAACCTCAACAACAATTGGGTGATTCAACTCTTGAAAACATTGATGCCTGGAGATGGAAACTTACCATGCTTCTTCGCAATAAAGATGAGCAAGAAGTTGTGTCCAATGAGAAAAAGGATCGCCGTGATTTTCTCCAACTTGAAACTTTAGCTACCAGGATGGGTTTATATAGTCGACAGTATGCAAAACTTGTTGTCTTTAGCAAGGCACCTTTGCCAAATTACCGCCCTGATCTCGATGATAAGCGTCCCCTGAGAGAGGTAACCATACCATACGGTGTTCATAGAGAAGTAGATACTCATCTCCTTGCTCATCTTTCACATAAGGCTACAAATAGATTAGGATCTTTGGATGATTCCTTGCACAGATCAAGTAATGATGGAAGCATTCCTGGTGACAAAGGAATTTTTGAGCACGTGGAGCCCATGAGCCATAATAGTGTTGTCAAAGAGAAAATCCTTCAAAGAAGAGGCTTGCAAATGCGTCAGCAACAACAAGGCTGGCAGGAATCTCCTGAAGGGATAAAGATGCTTGAATTTCGTAGTAGTCTTCCTGCATTCAAAGAGAAAGATGCATTTTTGAAAGTCGTTTCAGAGAATCAGGTCATTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAGCTTCCTCAATACATATTAGAATCTGAGATAGAAGCTGCACGTGGAGCTCTATGTAACATAATTTGTACTCAGCCTAGAAGAATATCTGCTATATCTGTTTCTGAAAGAGTTGCAGCAGAACGTGGGGAAAAATTGGGAGAATCTGTTGGTTATAAAGTTCGTTTGGAGGGTATGAAAGGGAGGGATACTCGTCTTCTTTTTTGTACCACAGGTGTTTTATTGCGGAGACTACTTGTGGATAGAAGTTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTCATTGTCCTGAAAGATCTTCTCCCTCGTCGGCCTGATTTGAGATTAATTCTGATGAGTGCAACTTTAAATGCTGAGCTATTTTCTTCCTACTTTGATGGTGCCCCGACTATGCATATACCTGGATTTACATTTCCAGTTCGAGCACATTTTCTTGAGGATATTCTGGAAAGGACTGGATATTGTTTGACTCCTTATAATCAAATTGATGACTATGGTAAAGATAAAACATGGAAAATGCAGAAACAAGCTCAGTCTTTCAAAAAAAGAAAGAGCCAGATTGCTTCTGCTGTTGAGGATGCATTAGAGGTTGCAGACTTTAAGGGTTATAGCCTACGCACTCAGGAGTCATTGTCTTGCTGGAACCCCGACTCAATTGGTTTCAACCTTATCGAACATGTTCTTTGCCACATTGTTAAGAATGAAAGGGCAGGTGCTGTTTTGGTTTTTATGACTGGTTGGGATGATATAAACTCTTTGATGGATCAACTTCAAGCTCATCCTTTGTTGGGTGATCACAGAAGAGTATTACTTCTTGCGTGCCATGGCTCTATGTCCAGCTCAGAGCAGAAGTTAATATTTGAACATCCTGAAGGAGGGGTGAGGAAGATTGTTCTGGCTACTAATATGGCCGAGACTAGTATTACCATCAACGACGTTGTCTTTGTGGTTGATTGTGGAAAAGCAAAAGAGACATCATATGATGCGTTGAATAACACTCCTTGTTTGCTTCCAGCATGGATCTCAAAAGCTGCTGCCCGACAGAGGAAAGGAAGGGCTGGTCGTGTTCAACCTGGCGAATGCTACCATCTTTATCCCAGACGCGTTTATGATGCTTTTGCTGATTATCAATTGCCAGAGCTTTTAAGAACACCTTTGCAGTCCTTATGTCTACAAATAAAAAGTCTACAACTTGGAAGCATCTCTGAGTTTTTATCTAGTGCTCTGCAGCCACCAGAGCCTCTATCGGTCCAAAATGCTGTTGAATATTTGAAGATCATCGGTGCCTTAGATGAGAATGAAAATTTGACAGTTCTTGGGCGCAAGTTGTCGGTGCTTCCCGTAGAGCCCAAGCTTGGCAAGATGCTCATCTTGGGAGCTATTTTCGACTGTTTGGATCCCATATTGACTGTTGTTGCTGGGCTTAGTGTGAGAGATCCATTTGTTATGCCTGCTGACAAGAAGGGGCTTGCAGAGTCTGTCAAGGCCCAGTTTGCTGCTCGTGACTATAGTGATCATCTTGCACTTGTCCGGGCCTATGATGGTTGGAAAGACGCCGAAGCACAGAAAGCTGGTTACGAGTACTGTTGGCGAAATTTTCTTTCTTCTCAAACACTTAGGGCTATTGAATCTCTTCGAAAGCAATTCTTTCACTTGCTCAAAGATATTGGTCTGGTTGGCAACAATTCTGAAACCAACAATAAATGGCGTAATGAGGTGCATATGCTTCGGGCAGTTATCTGTGCGGGTTTGTTTCCTGGAATATCCTCTGTTGTGAACAAGGAAAAGTCAATAGCATTGAAAACAATGGAGGATGGTCAGGTTCTTCTGTATGCTAACTCAGTAAATGCTGCGGTACCCAAAATTCCATACCCATGGTTAGTGTTTAATGAAAAGGTTAAAGTGAATACAGTATTCCTCAGGGATTCAACGGCCATATCTGATTCCATGCTGCTCTTATTTGGCGGGAACATATCCAAAGGTGGACTAGATGGGCACCTGAAAATGTTGGGAGGGTATCTGGAATTTTTCATGAAACCAGAGTTAGCCAAGACTTATTCAACTTTAAAGAGGGAACTGGAGGAACTGATACAGAAAAAACTTCTGGATCCAATGTTTGATACACAATCGCAAAATGAGCTTCTTTCAGCTGTAAGATTGTTGGTATCCGAGGACCATTGCGATGGCCGATTTGTTTATGGTCCACAAATTAAGGCAACAAACTCCAAAAGTGGTGTTGAAGTCGAGGGTGACAATTCTAAAAATCAGCTTCAAACATTTCTTAACAGGGCTCGACATGGATTACCAACTTACAAAACACAACAGCTGAGAAACAACCAATTCCGTTCTACTGTCATATTCAATGGCTTGGATTTTGTTGGCCAGCCATGCAACAGTAAGAAACTAGCAGAAAAATCTGCTGCTGCTGAGGCTATGCTATGGTTAAAAGGGGACAGCCATTCATCCGGTGATATTGACCATGCATCTGTGCTTTTGAAGAAAAGCAACAAGAACAGTAGGAAAAAATCATTTAGTGGCAGTTAA 3537 0.4187 MPLTPMRIRVPYSGIFRLATRRPILIPPTRFSRPSTFTSTSTPTTTNLRLRLSSSSPAFRHKTLAVPFLHQQSSTYGRFAFRDVSSDDSDLEIASSHSHARPQPQPQQQLGDSTLENIDAWRWKLTMLLRNKDEQEVVSNEKKDRRDFLQLETLATRMGLYSRQYAKLVVFSKAPLPNYRPDLDDKRPLREVTIPYGVHREVDTHLLAHLSHKATNRLGSLDDSLHRSSNDGSIPGDKGIFEHVEPMSHNSVVKEKILQRRGLQMRQQQQGWQESPEGIKMLEFRSSLPAFKEKDAFLKVVSENQVIVVSGETGCGKTTQLPQYILESEIEAARGALCNIICTQPRRISAISVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRSLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATLNAELFSSYFDGAPTMHIPGFTFPVRAHFLEDILERTGYCLTPYNQIDDYGKDKTWKMQKQAQSFKKRKSQIASAVEDALEVADFKGYSLRTQESLSCWNPDSIGFNLIEHVLCHIVKNERAGAVLVFMTGWDDINSLMDQLQAHPLLGDHRRVLLLACHGSMSSSEQKLIFEHPEGGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPAWISKAAARQRKGRAGRVQPGECYHLYPRRVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSSALQPPEPLSVQNAVEYLKIIGALDENENLTVLGRKLSVLPVEPKLGKMLILGAIFDCLDPILTVVAGLSVRDPFVMPADKKGLAESVKAQFAARDYSDHLALVRAYDGWKDAEAQKAGYEYCWRNFLSSQTLRAIESLRKQFFHLLKDIGLVGNNSETNNKWRNEVHMLRAVICAGLFPGISSVVNKEKSIALKTMEDGQVLLYANSVNAAVPKIPYPWLVFNEKVKVNTVFLRDSTAISDSMLLLFGGNISKGGLDGHLKMLGGYLEFFMKPELAKTYSTLKRELEELIQKKLLDPMFDTQSQNELLSAVRLLVSEDHCDGRFVYGPQIKATNSKSGVEVEGDNSKNQLQTFLNRARHGLPTYKTQQLRNNQFRSTVIFNGLDFVGQPCNSKKLAEKSAAAEAMLWLKGDSHSSGDIDHASVLLKKSNKNSRKKSFSGS 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00188 1178 Coils Coil 1010 1030 - -
Car06g00188 1178 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 465 IPR014001 -
Car06g00188 1178 Pfam Helicase conserved C-terminal domain 556 687 IPR001650 -
Car06g00188 1178 SMART DRBM_3 1084 1147 IPR014720 -
Car06g00188 1178 MobiDBLite consensus disorder prediction 96 112 - -
Car06g00188 1178 CDD SF2_C_RHA 545 696 - -
Car06g00188 1178 Gene3D - 548 706 IPR027417 -
Car06g00188 1178 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 86 1087 - -
Car06g00188 1178 Pfam DEAD/DEAH box helicase 299 449 IPR011545 GO:0003676|GO:0005524
Car06g00188 1178 Pfam Double-stranded RNA binding motif 1084 1144 IPR014720 -
Car06g00188 1178 MobiDBLite consensus disorder prediction 91 112 - -
Car06g00188 1178 Pfam Helicase associated domain (HA2) 751 829 IPR007502 GO:0004386
Car06g00188 1178 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 554 728 IPR001650 -
Car06g00188 1178 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 907 989 IPR011709 -
Car06g00188 1178 SMART helicmild6 582 688 IPR001650 -
Car06g00188 1178 Gene3D - 241 466 IPR027417 -
Car06g00188 1178 SUPERFAMILY dsRNA-binding domain-like 1067 1151 - -
Car06g00188 1178 SMART ultradead3 261 479 IPR014001 -
Car06g00188 1178 CDD DEXHc_RHA-like 304 464 - -
Car06g00188 1178 SMART ha2_5 750 841 IPR007502 GO:0004386
Car06g00188 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 885 IPR027417 -
Car06g00188 1178 PANTHER ATP-DEPENDENT RNA HELICASE 86 1087 - -
Car06g00188 1178 Gene3D - 730 832 - -
Car06g00188 1178 Gene3D - 1067 1150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00188 Car-Chr6 2085741 2096912 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00188 K14442 - gmx:100806141 1835.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00188 06 2085741 2096912 Car06g00188 06 2085741 2096912 ECH