Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00179 ATGGCTGAGGGGCTCGTTCTTCGCGGCACCATGCGTGCTCACACCGACGTTGTCACTGCAATCGCCACTCCGATTGATAACTCTGACATGATTGTCACCGCTTCACGTGACAAATCAATCATCCTCTGGCACCTAACCAAGGAGGAGAAGGTCTACGGTGTTCCCCGCCGTCGCCTCACTGGTCACTCTCACTTCGTTCAAGACGTTGTCCTCTCATCCGACGGTCAGTTTGCTCTCTCTGGTTCATGGGACGGTGAACTCCGTCTTTGGGATCTCAACGCCGGAACCTCCGCTCGCCGATTCGTCGGTCACACCAAAGACGTGCTTTCCGTCGCTTTCTCAATTGACAACCGTCAGATCGTGTCGGCTTCTCGTGACCGTACGATTAAGCTATGGAACACACTCGGTGAGTGCAAGTACACTATTCAAGACGGCGATGCTCATTCCGATTGGGTTAGCTGTGTTCGATTCAGCCCTAGCACTCTTCAACCAACAATTGTTTCTGCTTCATGGGATCGTACTGTGAAGGTTTGGAATCTGACTAATTGCAAGCTGAGAAACACACTCGCTGGCCATTCTGGCTATGTCAACACTGTTGCTGTTTCACCTGATGGTTCTCTCTGTGCCAGTGGTGGCAAAGATGGTGTTATTCTTTTGTGGGATTTGGCTGAGGGAAACTATGCTGGTTCTATTATTCATGCTTTATGTTTCAGTCCCAACAGGTACTGGCTTTGTGCTGCAACTGAGACCAGCATTAAGATCTGGGATTTGGAAAGCAAGAGCATTGTTGAGGACTTGAAGGTCGACCTTAAGGCTGAGGCCGAGTCTGGTAGTGAAACTACCAAGAAGAAGGTGATCTACTGTACAAGCTTGAACTGGAGTGCAGATGGAAGCACCTTATTTAGTGGCTATACAGATGGTGTTGTCAGAGTTTGGGGTATTGGGCGTTATTAG 954 0.4948 MAEGLVLRGTMRAHTDVVTAIATPIDNSDMIVTASRDKSIILWHLTKEEKVYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLNAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGNYAGSIIHALCFSPNRYWLCAATETSIKIWDLESKSIVEDLKVDLKAEAESGSETTKKKVIYCTSLNWSADGSTLFSGYTDGVVRVWGIGRY 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00179 317 CDD WD40 7 312 - -
Car06g00179 317 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Car06g00179 317 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 1 317 IPR045223 GO:0015935|GO:0043022
Car06g00179 317 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Car06g00179 317 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Car06g00179 317 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Car06g00179 317 Pfam WD domain, G-beta repeat 146 179 IPR001680 GO:0005515
Car06g00179 317 Pfam WD domain, G-beta repeat 9 43 IPR001680 GO:0005515
Car06g00179 317 Pfam WD domain, G-beta repeat 230 256 IPR001680 GO:0005515
Car06g00179 317 Pfam WD domain, G-beta repeat 187 221 IPR001680 GO:0005515
Car06g00179 317 Pfam WD domain, G-beta repeat 289 312 IPR001680 GO:0005515
Car06g00179 317 Pfam WD domain, G-beta repeat 99 133 IPR001680 GO:0005515
Car06g00179 317 Pfam WD domain, G-beta repeat 55 91 IPR001680 GO:0005515
Car06g00179 317 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 222 - -
Car06g00179 317 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Car06g00179 317 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 188 IPR001680 GO:0005515
Car06g00179 317 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Car06g00179 317 SMART WD40_4 94 133 IPR001680 GO:0005515
Car06g00179 317 SMART WD40_4 135 179 IPR001680 GO:0005515
Car06g00179 317 SMART WD40_4 224 256 IPR001680 GO:0005515
Car06g00179 317 SMART WD40_4 52 91 IPR001680 GO:0005515
Car06g00179 317 SMART WD40_4 278 313 IPR001680 GO:0005515
Car06g00179 317 SMART WD40_4 182 221 IPR001680 GO:0005515
Car06g00179 317 SMART WD40_4 4 44 IPR001680 GO:0005515
Car06g00179 317 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Car06g00179 317 Gene3D - 4 317 IPR015943 GO:0005515
Car06g00179 317 PANTHER BNAA06G12310D PROTEIN 1 317 - -
Car06g00179 317 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Car06g00179 317 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Car06g00179 317 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Car06g00179 317 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 281 317 - -
Car06g00179 317 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Car06g00179 317 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 95 - -
Car06g00179 317 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
Car06g00179 317 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 317 IPR001680 GO:0005515
Car06g00179 317 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
Car06g00179 317 SUPERFAMILY WD40 repeat-like 5 312 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00179 140 314 Miscellaneous Gene Families AT5G08390 25.824 5.67e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00179 K14753 - gmx:100778205 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00179 06 2015472 2017777 Car06g00179 06 2015472 2017777 ECH