Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00158 ATGAAATCAATGGCGTCTCAATCCAGCAACATATGGGTATTGTTGGGTCTCGGTTTAGCCGGAATATATGTTTTAACAAGAAAGCTTAAACAAACCGTCAAACTGGATTTCGGTGCTTTCATTCAAAAGCTTCAGTTGCTtcctcctccaccacctgctcctccCAAAGCTCCTCACCCACTCACCGCTCTCACTTTCGCCATTTCCGACCTATTTGACATAGAAGGACATGTGTCGTCGTTTGGACATCCAGAATGGGCAAGGACTCACGAAGctgcttcttctacatctccttctgtttctactCTTGTTGAAGCCGGTGCAACATGCCTTGGTACTACCGTTCTTGACGAATTCGCTTACGGTATCAGTGGCGAAAATAAGCATTTCGGAGCGCCTACCAATCCCGCTGTCCCTGCTCGAGTACCGGGTGGTTCCTCTAGTGGTGCTGCTGTCTCTGTTGCCGCCAATTTCGTTGATTTTTCATTGGGCGTCGATACTTCTGGAGGGGTGAGAGTACCTGCTGGATTCTGTGGGATTCTTGGATTTCGACCTTCACATGGAGCTGTTTCTCACGTGGGAATCATACCTGTTTCAACAAGTCTGGACACTGTTGGTTGGTTTGCAAAGGATCCTGATGTATTGCGTCGAGTTGGGCTTATACTTTTGCAAGCACCATTTGGAATGCAACGCAGTCCTCGACAAATAATTATAGCCGATGACTGTTTTCAACACCTAAATGTTCCTCTTGACAGGAGTTCTCAAGTGGTGATCAAAGCCACTGAGAAGGTTTTCGGAAAGCAAGTATTGAAGCATATAAATCTTGAGGATTATATAAGTTCTAAAGTTCCCAGCTTGAAGGCATATAGCCAGAAATCAAATGGTCAACTGAAATCTTCTTCGTTAAAATTACTTGCCAGTATTATGCAACTTCTACAAAGACATGAATTTGGACAAATACATGATGAGTGGATGAGCATAGTAAAACCCGAACTTCATCCAGCTGTTTCAGCACAATTGCATGAAAAATTTGAGGTTTCTGATGTAGAGATTGAAAACTCTAAATCTGTTAGAAGTGAGTTGCGTGTTGCTGTAAATTCACTTTTGAAGGACGAAGGAATTCTGGTGATCCCTACTGTAGCTGATCCTCCTCCAAAATTAGGTGGAAAGGAGTTCCTATCTCAAGATTATCAGAGCCGTGCATTGAGCCTGCTAAGTATTGCTAGCATATCAGGTTGCTGTCAGGTCACAATACCATTGGGATTTTATGACAAGTATCCTATTTCAGTGTCTTTGATAGCCCGGCATGGTGGTGACCGCTTTTTGCTGGACACACTAAAGACTATGTATACAATTCTCCAAGAGCAGGCTGATATTGCTGCCACAAGTAAATCATCAAAAAATGTTGTCAGCAAGGAACAATCTGCTGAGATTGCCAAAGAGAAGggaaatcaagcctacaaagataagcagtggcagaaagccattggtttttataccgaagctattaaactctgtggtgataatgcaacatactacagtaacagggctcaagcgtatctagaacttggcagttatctccaagctgaggcagattgtacaaaagcaataagtcttgacaaaaagAATGTGAAAGCCTACTTTCGTAGAGGCACAGCTAGAGAGATGCTTGGCTACTACAAAGAAGCAATTGATGATTTTAAATACGCCCTTGTACTTGAGCCAACCAACAAAAGGGCTGCTTCAGCTGCTGAAAGGTTGAGGAAGTTATTTCTGTAG 1779 0.3738 MKSMASQSSNIWVLLGLGLAGIYVLTRKLKQTVKLDFGAFIQKLQLLPPPPPAPPKAPHPLTALTFAISDLFDIEGHVSSFGHPEWARTHEAASSTSPSVSTLVEAGATCLGTTVLDEFAYGISGENKHFGAPTNPAVPARVPGGSSSGAAVSVAANFVDFSLGVDTSGGVRVPAGFCGILGFRPSHGAVSHVGIIPVSTSLDTVGWFAKDPDVLRRVGLILLQAPFGMQRSPRQIIIADDCFQHLNVPLDRSSQVVIKATEKVFGKQVLKHINLEDYISSKVPSLKAYSQKSNGQLKSSSLKLLASIMQLLQRHEFGQIHDEWMSIVKPELHPAVSAQLHEKFEVSDVEIENSKSVRSELRVAVNSLLKDEGILVIPTVADPPPKLGGKEFLSQDYQSRALSLLSIASISGCCQVTIPLGFYDKYPISVSLIARHGGDRFLLDTLKTMYTILQEQADIAATSKSSKNVVSKEQSAEIAKEKGNQAYKDKQWQKAIGFYTEAIKLCGDNATYYSNRAQAYLELGSYLQAEADCTKAISLDKKNVKAYFRRGTAREMLGYYKEAIDDFKYALVLEPTNKRAASAAERLRKLFL 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00158 592 Pfam Tetratricopeptide repeat 545 577 IPR013105 -
Car06g00158 592 Gene3D Amidase signature (AS) domain 51 449 IPR036928 -
Car06g00158 592 SUPERFAMILY Amidase signature (AS) enzymes 20 446 IPR036928 -
Car06g00158 592 Pfam Amidase 59 211 IPR023631 -
Car06g00158 592 Pfam Amidase 324 443 IPR023631 -
Car06g00158 592 ProSiteProfiles TPR repeat profile. 510 543 IPR019734 GO:0005515
Car06g00158 592 Gene3D Tetratricopeptide repeat domain 450 591 IPR011990 GO:0005515
Car06g00158 592 SUPERFAMILY TPR-like 474 581 IPR011990 GO:0005515
Car06g00158 592 ProSiteProfiles TPR repeat region circular profile. 544 577 - -
Car06g00158 592 ProSiteProfiles TPR repeat profile. 544 577 IPR019734 GO:0005515
Car06g00158 592 Pfam Tetratricopeptide repeat 510 543 IPR019734 GO:0005515
Car06g00158 592 PANTHER AMIDASE 1 4 591 - -
Car06g00158 592 SMART tpr_5 510 543 IPR019734 GO:0005515
Car06g00158 592 SMART tpr_5 476 509 IPR019734 GO:0005515
Car06g00158 592 SMART tpr_5 544 577 IPR019734 GO:0005515
Car06g00158 592 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 4 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00158 Car-Chr6 1844848 1852910 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00158 36 449 Acyl Lipid Metabolism Gene Families AT1G08980 51.790 5.90e-145 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00158 - - gmx:100786059 957.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00158 06 1844848 1852910 Car06g00158 06 1844848 1852910 ECH