Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00060 ATGGGAGATCCATCGGAGAGATTGGGATCGGAAGGTTTGGACTCCGGCGTCTCTGCTAAATTCGATGACTTGTGCATGGAAATTGATCCGCCGTTTCAGGGAAACGCTGCAACTGCTGAGGATTGGCGGAAGTCTCTCAATAAAGTCGTCCCCGCCGTTGTCGTTCTAAGAACAACCGCTACTCGAGCTTTCGATACGGAGTCTGCTTTCGCCAGTTCCGCTACTGGTTTCGTCGTTGATAAGCGCCGTGGTATTATTCTCACCAATCGCCATGTCGTCAAGCCTGGACCTGTTGTTGCAGAAGCTATGTTTTTGAACCGCGAAGAGGTTTCGGTGCATCCTATATACAGAGATCCAGTACATGATTTTGGGTTCTTTCGGTATGATCCTAGTGCTATACAATTTTTAAACTATGAAGAGATACCTCTTGCCCCTGAGGCTGCTTATGTTGGATTGGAAATCAGAGTTGTTGGTAATGACAGTGGTGAGAAGGTTTCCATTTTGGCTGGTACTATTGCTCGTTTGGATAGAGATGCTCCAGTGTATAAGAAGGATGGCTATAACGACTTCAACACATTCTATATGCAAGCAGCATCTGGGACCAAAGGAGGATCCAGTGGTTCCCCAGTTATAGATTGGGAAGGCAAGGCAGTGGCTCTGAATGCTGGGAGCAAGTCTTCAAGTGCATCGGCATTCTTTCTACCTCTAGAACGAGTTGTAAGGGCATTAAGGTTTCTTCAAACGGGGAGTGAAACTTATGTTGATAAATGGAAGGCAGTTTCTATACCTCGTGGTACACTTCAGGTGACTTTTCTCCATAAAGGGTTTGATGAGACTCGTCGGCTTGGCCTCAGAAGTGAGACAGAGCAGATAGTACGACATGCTTCTCCTGCCAGTGAAACTGGAATGCTTGTTGTGGAATCTGTGGTGCCAGGTGGCCCAGGCTATAAACATTTGGAACCGGGTGATGTACTTGTTCGTGTCAATGGTGAAGTCATTACTCAATTCCTTAAACTGGAGACTATACTTGATGACAGTATAAACTCAAATATTGAATTACAAATTGAAAGGAGTGGTACATCAAAGAGTTTAACTCTATTGGTACAAGATTTGCACTCAATAACTCCCGATTATTTCTTGCAAGTCAGTGGAGCAGTAATACACCCTCTTTCATATCAGCAGGCTAGAAACTTCCGATTCCATTGTGGTCTTGTCTATGTGGCAGATCCAGGATATATGCTCTTTAAAGCAGGAGTTCCTCGCCATGCAATAATTAAGAAATTTGCTGGTGAAGAAATATCTTGCCTCGACGAATTTATATCAGTTCTATCTAAGTTATCAAGAGGTGCTCGAGTACCATTAGAGTATATAAGCTATGTGGATCGTCATCGCAGGAAGTCAGTGCTGGTGACGGTTGATCGCCATGAATGGTATGCACCTCCCCAGATATACACTCGAGACAATAGTACTGGCCTCTGGATAGCTAAGCCTGCTTTTCAGCCTGACTCCCTTTTTCTATCATCTGGGGCTAAAGATGCTGGAAATCTGGCCAGTCGCACAACGTCATTGAGTGATGAGCATGTTTGTGGGGGCCACGTGAGTGAAGGAAACAATCAGGAGTTGGTCGATGGTGTCACTAGCATGGAAACTAATTATGAGGACTCTTCAGAGTGTATATCTCACAACAATGGATCTGACGGGGTTGTCAAAAAACGGAGAGTAGATGATTTATCAACTGATGAAAGTGTAGCTGATTTGTCCTTAAATGAATCCCAGGAAACTAAGCTAGAAAAATCTGGTGCTATCCAGGATGATGGGTTTATGGACTATCAAGGTGCAACTGCTGCCACAGCAAATGCGTCATTCACTGAACGGGTGATTGAGTCTACTCTTGTAATGTTTGAGGTTCATGTTCCTCCATCTTGTATGCTTGATGGTGTTCATTCACAGCAATTTTTAGGAACTGGTGTCATAATATATCACTCTCAAGATATGGGATTAGTTGCAGTTGACAGGAATACTGTTGCAGTATCTTCCTCTGATGTGCTGCTATCTTTTGCTGCTTTCCCAATTGAAATTCCTGGAGAGGTGGTATTTCTCCATCCTGTTCACAATTATGCTCTCGTATCATATGACCCCTCTGCTTTGGGACCTGTTGGTGCTTCAGTGGTTCGTGCTGCGGAGTTACTTCCAGAGCCAGCATTAAGCAGAGGGGATTCTGTTTACCTTGTGGGCTTAAGTAGAAGCCTTCAAGCAACTTCTAGGAAATCAGTTGTTACCAATCCTTCTGCTGCTTTAAATATAGGATCTGCAGAAAATCCACGTTACAGGGCGACCAATATGGAAGTTATTGAGCTTGATACGGATTTTGGTGGTTCATTTTCGGGTGTGCTAACAGATGAACAAGGAAGGGTCAAAGCTTTATGGGGAAGCTTCTCTACTCAGAAGAAGAAAAAGAGAAGAAAGGTGAAAACTGGGAAAAGACGCAACGAGACAATATTTACTCGTACTCCAAAAGGCTACCAGATGCTGAAATTTGGTAGCACATCAGAAGATCATCAATTTGTGAGGGGCATTCCAATTTATGCAATAAGCCAGGTCCTGGACAAGATCATATCTGGTGCAAATGGGCCACCTCTTCTCATAAATGGTGTCAAAAGGCCTATGCCACTTCTGAGAATTTTAGAAGTTGAACTTTATCCAACATTACTTTCAAAGGCTCGCAGTTTTGGACTAAGTGATGCTTGGATTCAGGCGCTTGTTAAGAAAGACCCCATAAGACGACAGGTTTTACGTGTTAAAGGTTGTTTGGCTGGATCAAAGGCTGAAAATCTTTTGGAGCAAGGGGACATGGTTTTAGCAATCAATAAAGAACCAGTCACACGCTTCCATGACATTGAAAATGCTTGCCAAGCTTTAGATAAATCTAATACCAATGATGGCAAGCTTCAGATGACTATTTTTCGGCAGGGACGAGAGATTGAACTTCTTGTGGGAACAGATGTTAGGGATGGAAATGGCACAACTCGTATAGTTAATTGGTGTGGTTGTATAGTTCAAGATCCACATCCAGCAGTACGTGCTCTTGGATTTCTTCCTCAAGAAGGTCACGGTGTATATATGGCAAGATGGTGTAATGGGAGTCCAGTACATAGATATGGTATGTATGCTCTTCAATGGATAGTTGAAATTAATGGAAAGCCAACTCCTGATCTAGATTCTTTTGTAAATGTGACAAAGGAACTAGAACATAGAGAATTTGTTAGAGTAAAGACAATTTATCTCAATGGTAAACCACGAGTCCTAACGTTGAAACAAGATTTGCATTATTGGCCTACATGGGAATTGAGGTTCAATCCAGACACCGCAATTTGGCATCGTAGTGTAATCAAGGCATTGAATTGCAGTTAA 3411 0.4301 MGDPSERLGSEGLDSGVSAKFDDLCMEIDPPFQGNAATAEDWRKSLNKVVPAVVVLRTTATRAFDTESAFASSATGFVVDKRRGIILTNRHVVKPGPVVAEAMFLNREEVSVHPIYRDPVHDFGFFRYDPSAIQFLNYEEIPLAPEAAYVGLEIRVVGNDSGEKVSILAGTIARLDRDAPVYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWEGKAVALNAGSKSSSASAFFLPLERVVRALRFLQTGSETYVDKWKAVSIPRGTLQVTFLHKGFDETRRLGLRSETEQIVRHASPASETGMLVVESVVPGGPGYKHLEPGDVLVRVNGEVITQFLKLETILDDSINSNIELQIERSGTSKSLTLLVQDLHSITPDYFLQVSGAVIHPLSYQQARNFRFHCGLVYVADPGYMLFKAGVPRHAIIKKFAGEEISCLDEFISVLSKLSRGARVPLEYISYVDRHRRKSVLVTVDRHEWYAPPQIYTRDNSTGLWIAKPAFQPDSLFLSSGAKDAGNLASRTTSLSDEHVCGGHVSEGNNQELVDGVTSMETNYEDSSECISHNNGSDGVVKKRRVDDLSTDESVADLSLNESQETKLEKSGAIQDDGFMDYQGATAATANASFTERVIESTLVMFEVHVPPSCMLDGVHSQQFLGTGVIIYHSQDMGLVAVDRNTVAVSSSDVLLSFAAFPIEIPGEVVFLHPVHNYALVSYDPSALGPVGASVVRAAELLPEPALSRGDSVYLVGLSRSLQATSRKSVVTNPSAALNIGSAENPRYRATNMEVIELDTDFGGSFSGVLTDEQGRVKALWGSFSTQKKKKRRKVKTGKRRNETIFTRTPKGYQMLKFGSTSEDHQFVRGIPIYAISQVLDKIISGANGPPLLINGVKRPMPLLRILEVELYPTLLSKARSFGLSDAWIQALVKKDPIRRQVLRVKGCLAGSKAENLLEQGDMVLAINKEPVTRFHDIENACQALDKSNTNDGKLQMTIFRQGREIELLVGTDVRDGNGTTRIVNWCGCIVQDPHPAVRALGFLPQEGHGVYMARWCNGSPVHRYGMYALQWIVEINGKPTPDLDSFVNVTKELEHREFVRVKTIYLNGKPRVLTLKQDLHYWPTWELRFNPDTAIWHRSVIKALNCS 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00060 1136 SUPERFAMILY Trypsin-like serine proteases 40 243 IPR009003 -
Car06g00060 1136 Gene3D - 930 1004 IPR036034 GO:0005515
Car06g00060 1136 Gene3D - 145 255 IPR043504 -
Car06g00060 1136 SUPERFAMILY Trypsin-like serine proteases 643 816 IPR009003 -
Car06g00060 1136 SUPERFAMILY PDZ domain-like 1036 1114 IPR036034 GO:0005515
Car06g00060 1136 SMART pdz_new 1027 1096 IPR001478 GO:0005515
Car06g00060 1136 SMART pdz_new 908 991 IPR001478 GO:0005515
Car06g00060 1136 SMART pdz_new 280 359 IPR001478 GO:0005515
Car06g00060 1136 PRINTS HtrA/DegQ protease family signature 84 96 IPR001940 GO:0004252|GO:0006508
Car06g00060 1136 PRINTS HtrA/DegQ protease family signature 150 174 IPR001940 GO:0004252|GO:0006508
Car06g00060 1136 PRINTS HtrA/DegQ protease family signature 191 208 IPR001940 GO:0004252|GO:0006508
Car06g00060 1136 PRINTS HtrA/DegQ protease family signature 213 230 IPR001940 GO:0004252|GO:0006508
Car06g00060 1136 PRINTS HtrA/DegQ protease family signature 318 330 IPR001940 GO:0004252|GO:0006508
Car06g00060 1136 Pfam Peptidase family M50 305 370 IPR008915 GO:0004222|GO:0006508
Car06g00060 1136 ProSiteProfiles PDZ domain profile. 269 370 IPR001478 GO:0005515
Car06g00060 1136 PANTHER PROTEASE DO-LIKE 7 844 1133 - -
Car06g00060 1136 PANTHER PROTEASE DO-LIKE 7 20 818 - -
Car06g00060 1136 CDD PDZ_metalloprotease 305 366 - -
Car06g00060 1136 Pfam Trypsin-like peptidase domain 74 220 - -
Car06g00060 1136 Pfam PDZ-like domain 1008 1084 IPR025926 -
Car06g00060 1136 Pfam PDZ-like domain 373 446 IPR025926 -
Car06g00060 1136 SUPERFAMILY PDZ domain-like 304 403 IPR036034 GO:0005515
Car06g00060 1136 Pfam PDZ domain 305 357 IPR041489 -
Car06g00060 1136 Gene3D - 30 140 IPR043504 -
Car06g00060 1136 SUPERFAMILY PDZ domain-like 932 1033 IPR036034 GO:0005515
Car06g00060 1136 Gene3D - 280 372 IPR036034 GO:0005515
Car06g00060 1136 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 20 818 - -
Car06g00060 1136 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 844 1133 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00060 K22686 - gmx:100809144 1958.34