Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00058 ATGATTGTGAACAAGAGAAAGAGAAGTTACAATTCAGTTTCGTCTCTATCACCATCAACCTCAATCCCTCAACACAAATCCCCAGACTCTCCCAAACCATTACCACTCAGCAAAATTAAATCCCTCTTCGAAATAATTTCCACAAACCCCTCATTAACCGTCGAAAAATCCCTCGAAGAATCATCTATAAATGTCACACCACAAGACGTTGAACAAGTCCTCAAACTCTCTTACCGGTTCCCTGCTCAAGCGGTCAAATTCTTCCGTTGGTCCGGTCACCGCATCAACCACAACCACACTCCCTACGCTTGGAATCTCGTCATCGATATATTAGGCAAAAACTGTTTATTCGATGCAATGTGGGACGCCGTTAAATCAATGCGTCGTGAAGGTTTACTTTCGCGTTCAACTTTCGCTTCGATTTTCTCTAGTTACGTTAACGCCGATAGAATCGGTGACGCCGTTACGACTTTCGAGGTTATGGACGGTTACGGTTGCGTTAGGGATGTTGTTTCTTTGAATTCGCTTTTGAGTGCTATTTGTAGGAGCGGTAGGACTGTTGAAGCTTGTGATTATTTGCAATTAGCTAAGAAAATTGTTAGGCCTGATTCTGATACTTATGCGATTTTGATGGAAAGTTTGGAGAATGATGGAAATGTTGTTGGTGCTAAAGAGACTTTTGCTGAAATGGTTATTGAAATTGGTTGGGATCCTAATAATGTTCCTGCTTATGATTCATTTTTATGTGCTTTGATTAAAGGTTCTGATGGGATTCATGAATCTGTTAAGTTTTTTGATTCCATGAGAGATAGGAAATGTTACCCTGGGATTAGGTTTTTTAGGATTGCTCTTGATGAGTGTGTTAGGTTTCATGATATAAAGAGGGCTGAATTTTTTTGGGAGGTTATGTTGGGGAAGACTAAGTTGCAGCCGACTACGGCTATGTATAATTCCATGATTACTTTGTGTTGTTATCATGGTGATATCGATGCTGCCATGAAGTTGCTTGATGGAATGGTTTATAAAGGGGCTTTTCCGGATTCGCTTACTTATAATTTGTTGTTTAGGTTTTTGATTAAGGGAAGGAAATTGCGGGAGGCTTCGAGGATGTTTAATGAGATGGTGAAAAATGAGTGTGTGCCGGATCAGCTTAATTGTGACGCGGCTGTTAGGGTTTACTTGGATAATGGGGATCCTGTCATGGCTTTAAAAATTTGGAAATGTTTGGTTGAGAATTACCGCGAGGATTTGGAGGATACTGCAAATTTGTTGGTAGTAGGGCTTCGAGATAATGGTAGGGTCCCCGAGGCAGTTAAGTATGCTGAGCATATTATTGGCAGAGGAATCAAGTTAACTTCTTCTACGTTGTCGAAGTTGAGACAAAGCCTTGTCAAAGAAAGGAAAGAGTTTGTGTATAATGAACTTTTAGCAAAATGGAAATCCTATTAG 1449 0.403 MIVNKRKRSYNSVSSLSPSTSIPQHKSPDSPKPLPLSKIKSLFEIISTNPSLTVEKSLEESSINVTPQDVEQVLKLSYRFPAQAVKFFRWSGHRINHNHTPYAWNLVIDILGKNCLFDAMWDAVKSMRREGLLSRSTFASIFSSYVNADRIGDAVTTFEVMDGYGCVRDVVSLNSLLSAICRSGRTVEACDYLQLAKKIVRPDSDTYAILMESLENDGNVVGAKETFAEMVIEIGWDPNNVPAYDSFLCALIKGSDGIHESVKFFDSMRDRKCYPGIRFFRIALDECVRFHDIKRAEFFWEVMLGKTKLQPTTAMYNSMITLCCYHGDIDAAMKLLDGMVYKGAFPDSLTYNLLFRFLIKGRKLREASRMFNEMVKNECVPDQLNCDAAVRVYLDNGDPVMALKIWKCLVENYREDLEDTANLLVVGLRDNGRVPEAVKYAEHIIGRGIKLTSSTLSKLRQSLVKERKEFVYNELLAKWKSY 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00058 482 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 33 480 - -
Car06g00058 482 Pfam PPR repeat 103 132 IPR002885 -
Car06g00058 482 Pfam PPR repeat 171 195 IPR002885 -
Car06g00058 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 275 IPR002885 -
Car06g00058 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Car06g00058 482 Gene3D Tetratricopeptide repeat domain 237 341 IPR011990 GO:0005515
Car06g00058 482 TIGRFAM PPR: pentatricopeptide repeat domain 350 382 IPR002885 -
Car06g00058 482 TIGRFAM PPR: pentatricopeptide repeat domain 315 347 IPR002885 -
Car06g00058 482 TIGRFAM PPR: pentatricopeptide repeat domain 137 170 IPR002885 -
Car06g00058 482 TIGRFAM PPR: pentatricopeptide repeat domain 102 132 IPR002885 -
Car06g00058 482 MobiDBLite consensus disorder prediction 1 27 - -
Car06g00058 482 Gene3D Tetratricopeptide repeat domain 78 236 IPR011990 GO:0005515
Car06g00058 482 Gene3D Tetratricopeptide repeat domain 342 481 IPR011990 GO:0005515
Car06g00058 482 PANTHER OS02G0711100 PROTEIN 33 480 - -
Car06g00058 482 MobiDBLite consensus disorder prediction 1 33 - -
Car06g00058 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Car06g00058 482 Pfam PPR repeat family 311 357 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00058 Car-Chr6 750471 753396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00058 117 478 Glycosyltransferase AT1G05670 23.016 5.53e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00058 - - gmx:100784707 657.907