Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00040 ATGTCTCTGCGCGTGTCAATGGCGAAATTGTTCAAAAAACTTCGTTTTCCTGCTTCCAACGCCTTCTCTACACTTTCCACCAATTCATTGCCCATCTCATTTTCCGGTAAAACATTTTCCCACTGGTATCAAAGTGGAGCATATGGTTGGAGAATAAATCTTAGGGATCCTTGTTTATGCTGGACATTTGTGACTCTAGGGATTAGTGCCAACACTGTGTTTGCAGAGGATGCAACGGCCAAAACATCTTCCGATAATAATCCTGGGGATGATTTAACTGGATTTAGAAAAATTGAGGATGGTTCTGTAGCCTCAAATATACATACAGCAAAATGGAGAGTCTTTACTGATAAAGCAAGAGAGCTTTTTCTACAGGGAAAACTCAATGATGCTGAAAGACTCTTCCTTTCTGCCATACAAGAAGCTAAAGAAGGTTTTGGCGAGCAAGATCCGCATGTTGCGTCTGCATGCAACAATTTGGCCGAGTTGTACAGGGTCAAAAAGGCATTTGACAAAGCAGAACCATTGTATTTGGAAGCTATCAAGATCTTAGAAGAATCTTTTGGTCCTGACGATGTAAGGGTTGCGGTTGCTGTTCACAACCTAGGGCAGTTCTACCTTGGACAGCGGATGTTGGAAAAAGCTCGAGTTAGCTATGAGCGCGCTTTGAAGATAAAAAGGCGTGTTCTGGGATATGAACATTCAGAATGTTCAGATACAATGTATCAAATCGGCATGGTGCTGTATCTTGAAGGAAAAGAAAAGGATGCCGAGGCCCTTATTAAGGACTCTATAAGCATGCTAGAGAGAAGTGCTGAAGGGGAGTCACTTGTATGCATTAGAAGACTCCGTTTCCTCTCACAGATATATTTGAAATCACATCGACTTGATGAAGCTGAGATGGTACAGAGAAAGATCCTAAATATAATGGAATTGTCAAAGGGATGGAATTCCTTGGACACAGTTATTGCAGCTGAATCCCTGGCCCTGACCCTACATGCATCATCCGAAACAAAACAGTCAAAAGAGCTTCTTGAAAGATGTCTTGAAGTCCGGAAAGCCTTACTTCCTAGTGTTCACATTCAGATTGGTGCAAACCTACTTCATCTAGCAAGAGTGGCAATACTTGATTCCAGCCAACAAAAAAAAAGCGATGTTTCTAGAGCTAAAGCTGAGCTTGATATGGCAAAGGATCATTTGCATAATTCCATAAGGATTGCGCGTCAATGTTTAGATAAGGTATTGAAACAAAAAGACAAGTTGAAGAAAAACAGTGTGCTTGTACATTCTAAAAAAGAAGCCCATGCAGCACTTGTCATATTGTTGCAATCACTCAGTACTCTATCATCGGTGGAGTTTGCTAAGCAAGAATTGCAGGAGACTCAGAAAGGGAATACCAACGTTGAAGCTCAAGAGGCACTTCTTCAATGCATTGCTACTTACAAGGAGTTTGTACATGAGAAGTCCATTGTTGATTCTCCTGAAATAAAGAACGAATATCTTTCATGTTTTAAGCGTGCTCAAAGCTTGCTTGGCGATAAGCTTAATGCAGAGGATTTCCAAAAGCTGAATCAGCCATCATGA 1584 0.411 MSLRVSMAKLFKKLRFPASNAFSTLSTNSLPISFSGKTFSHWYQSGAYGWRINLRDPCLCWTFVTLGISANTVFAEDATAKTSSDNNPGDDLTGFRKIEDGSVASNIHTAKWRVFTDKARELFLQGKLNDAERLFLSAIQEAKEGFGEQDPHVASACNNLAELYRVKKAFDKAEPLYLEAIKILEESFGPDDVRVAVAVHNLGQFYLGQRMLEKARVSYERALKIKRRVLGYEHSECSDTMYQIGMVLYLEGKEKDAEALIKDSISMLERSAEGESLVCIRRLRFLSQIYLKSHRLDEAEMVQRKILNIMELSKGWNSLDTVIAAESLALTLHASSETKQSKELLERCLEVRKALLPSVHIQIGANLLHLARVAILDSSQQKKSDVSRAKAELDMAKDHLHNSIRIARQCLDKVLKQKDKLKKNSVLVHSKKEAHAALVILLQSLSTLSSVEFAKQELQETQKGNTNVEAQEALLQCIATYKEFVHEKSIVDSPEIKNEYLSCFKRAQSLLGDKLNAEDFQKLNQPS 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00040 527 ProSiteProfiles TPR repeat profile. 196 229 IPR019734 GO:0005515
Car06g00040 527 Coils Coil 451 471 - -
Car06g00040 527 SUPERFAMILY TPR-like 234 367 IPR011990 GO:0005515
Car06g00040 527 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 516 - -
Car06g00040 527 SUPERFAMILY TPR-like 110 227 IPR011990 GO:0005515
Car06g00040 527 SMART tpr_5 154 187 IPR019734 GO:0005515
Car06g00040 527 SMART tpr_5 322 355 IPR019734 GO:0005515
Car06g00040 527 SMART tpr_5 238 271 IPR019734 GO:0005515
Car06g00040 527 SMART tpr_5 112 145 IPR019734 GO:0005515
Car06g00040 527 SMART tpr_5 196 229 IPR019734 GO:0005515
Car06g00040 527 Gene3D Tetratricopeptide repeat domain 277 405 IPR011990 GO:0005515
Car06g00040 527 Pfam Tetratricopeptide repeat 156 227 - -
Car06g00040 527 Gene3D Tetratricopeptide repeat domain 116 276 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00040 - - ccaj:109796654 775.778