Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03465 ATGAAGATGAAGTTGGCAATCCAATTTCCAATACTAATAGTAATAGTATTAGTAGGATGGTGTTGGGCGGAGCAATGTGGAAAACAAGCTGGTGGTGCGTTGTGCCCCGGTGGATTATGCTGCAGCAAATTTGGTTGGTGTGGTTCAACCAGTGACTATTGCGGTGATGGTTGCCAGAGTCAATGTGGAAGCGGTGGTGGTGGTGTTGGTAGCATCATATCGAGGGACACCTTCAACCAGATGCTGAAGCATCGAGACGATAGTGGTTGTGAGGGGAAAGGATTCTACACCTACGAAGCTTTCATTGCAGCTGCTAAGTATTTCCCTGATTTGGGTAATAACGGAGATACTGCAACTAAGAAAAGAGAGATTGCGGCTTTCTTGGGACAAACATCTCACGAAACGACAGGTGGATGGTCAAGTGCACCTGATGGTCCATACGCTTGGGGATATTGCTTTTTGAGAGAACAGAACCCAAGTACATACTGTCAACCAAGCTCTGAATACCCATGTGCTTCTGGTAAGCAATACTACGGTCGTGGTCCAATACAGTTATCTTGGAATTATAACTACGGACAGTGTGGTAGAGCAATTGGTGTTGATTTGCTTAATAACCCAGACCTTGTTGCTACCGACCCTGTTATTTCCTTCAAGACCGCTATATGGTTCTGGATGACCCCACAGTCACCCAAGCCATCCTGTCATGATGTTATCACCGGACGATGGAATCCTTCTACTTCTGATCGTGCGGCTGGTAGGCTTCCTGGTTATGGTACTGTTACCAACATCATTAACGGTGGACTTGAATGCGGTAGAGGACATGATAGCAGAGTTCAAGATCGGATCGGTTTTTACAAGAGATACTGTGACATCTTTGGTATTGTTTACGGAGATAACATTGACTGTGCTTCTCAAACACCATTTGCTTCTTCTCTATCCTTCTCATCATTGCTGCTCCAATCCAAACCATCCACACCTAGTCAGTAG 987 0.4539 MKMKLAIQFPILIVIVLVGWCWAEQCGKQAGGALCPGGLCCSKFGWCGSTSDYCGDGCQSQCGSGGGGVGSIISRDTFNQMLKHRDDSGCEGKGFYTYEAFIAAAKYFPDLGNNGDTATKKREIAAFLGQTSHETTGGWSSAPDGPYAWGYCFLREQNPSTYCQPSSEYPCASGKQYYGRGPIQLSWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTAIWFWMTPQSPKPSCHDVITGRWNPSTSDRAAGRLPGYGTVTNIINGGLECGRGHDSRVQDRIGFYKRYCDIFGIVYGDNIDCASQTPFASSLSFSSLLLQSKPSTPSQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03465 328 ProSitePatterns Chitinases family 19 signature 2. 215 225 IPR000726 GO:0004568|GO:0006032|GO:0016998
Car05g03465 328 Pfam Chitin recognition protein 25 62 IPR001002 GO:0008061
Car05g03465 328 SMART ChitinBD_3 25 62 IPR001002 GO:0008061
Car05g03465 328 SUPERFAMILY Plant lectins/antimicrobial peptides 25 65 IPR036861 GO:0008061
Car05g03465 328 ProSitePatterns Chitin recognition or binding domain signature. 35 54 IPR018371 GO:0008061
Car05g03465 328 Gene3D Endochitinase, domain 2 155 211 - -
Car05g03465 328 ProSiteProfiles Chitin-binding type-1 domain profile. 23 64 IPR001002 GO:0008061
Car05g03465 328 SUPERFAMILY Lysozyme-like 69 308 IPR023346 -
Car05g03465 328 CDD chitinase_GH19 75 302 - -
Car05g03465 328 PIRSF Endochitinase 1 309 IPR016283 GO:0004568|GO:0005975
Car05g03465 328 Gene3D - 23 64 IPR036861 GO:0008061
Car05g03465 328 Gene3D - 72 303 - -
Car05g03465 328 CDD ChtBD1_GH19_hevein 24 56 - -
Car05g03465 328 PANTHER CHITINASE 2 12 311 - -
Car05g03465 328 Pfam Chitinase class I 72 302 IPR000726 GO:0004568|GO:0006032|GO:0016998
Car05g03465 328 PRINTS Chitin-binding domain signature 33 41 IPR001002 GO:0008061
Car05g03465 328 PRINTS Chitin-binding domain signature 41 48 IPR001002 GO:0008061
Car05g03465 328 PRINTS Chitin-binding domain signature 48 55 IPR001002 GO:0008061
Car05g03465 328 PANTHER CHITINASE-RELATED 12 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03465 Car-Chr5 79126782 79128185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03465 23 317 Glycoside Hydrolase AT3G12500 68.977 3.03e-154 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03465 K20547 - rcu:8282410 478.789