Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03460 ATGTATTTTTGTGGAGCAAAATGGATGTCAGCCTCTGTGTCTCAGTCTCCTCTAATTCCATCCAAATGCTCAAACCAATCACTAATTTCTTCTTCTTCCTCCAATAATTATCGCCCCGCCGTTATTCTCCCGGGGTTAGGGAACAATTCGGGTGACTACCAGAAGTTGGAGGCAACACTGAAGGAAAACTACGGCGTGTCCACCGTGGTTGCTAAGGTATCGAGACTTGACTGGCTCCGAAATGCCGCCGGTTTGATTGATTCCAATTACTGGCGTGGCACTCTTGAACCAACCCCTGTCCTTGATTGGTATTTGAAGAGGGTTGATGATGCTGTTCAAGAGGCTAAGGATTTGGCACCAGATTCCACTCTATCATTCATTGGCCACTCAGCAGGTGGATGGCTTGCACGTCTCTATATGCAACAATTTGGGATCTCCGATATATCATTGTTACTCACTCTCGGAACCCCTCACCTCCCAGCTCCAAAAGGAGTGCCCGGTGTTATCGATCAAACCAGGGGCCTCCTTGATTACGTTGAAAAATATTGCTCAAAAGCTGTTTACACCCCTCAACTCAAGTATGTATGTATAGCAGGAAGGTATATTGAAGGGGCTCCGCTTTTTGGCAAGTCAAATCCAAATGCTGAGTCTCAGGGTGTGCTTCCTACTAATAGTTCTCAGCTACTTCCTGAGGCTGCTATTATCAACGCTGCAATCACTTCTCCTAACACAACATTACGTGCTCGCTTTGTTGGCCAAGGATACAAGCAGGTTTGTGGACAAGCAAATGTATGGGGTGATGGTGTTGTGCCACAAGTATCAGCTCATCTTGAGGGTGCACTTAACATTTGCTTAGACGGAGTTTATCACTCACCAGTTGGTTCAGACGATGCCATTAGACCATGCCTTGGGTTCGGAGGGAGAATGTCGTGTTTATTGCCACAATTCAACTGCCACCCCGATACTTTCAGAACTCCTCTTCCTACCCACCGCCATCATCTTATTCTTCTTCTTCAAACCAAAACAAGACACAATTTGTATTTCCGCCCACAATGTATTTTGTCTGCCGCACCTCCTTCAACTTCTGCACTCATTGATTTCGAtgttgctgctgctgctgctgctgcAAACTCACCTAATTGGCCCTATGTCGCTCAGGCACACTTTAAAGCAACCTCATCTGCAGAATCACTTCTTACTAATGAAGAGGCTGTAATAGCTGCTGCTGCTTCTGAAGCTCTTACTCTTGCTAAAGCAGCTGCAAAGGTTGCAAAGGACGCAGCTCTATTAGTTAAAAAGAAGCCCCTGCAAGAAGCTGGGTTTAAATCGCAACTTCCTTCCACGCCTGATAATTTTCTTCTCAAATGGGTTCAACACATGGAAGCACAAGAAGCTGTAGCAGGAGGAGGATCCGTGAGCAATGGAGCAGAAATATTGGAAGATGTTGACATCAGCCCCAACCAGGAGGAGTTGGATGAGGAGGAGCCTACCTGTGAGGAACTTGAAAATTCCGAGGAACAGCTTTCCGATAGTATAGATGCAAGATCTGGGCGCCAAACAGAAAGAAAAGCCAGAAGAGTCAGAGCATCTGGGAAAGCTGCTACAAATATTGTGTCTTTTAAGTCTGGATCCACCAGCAGGAAAAGGCGTGTTCGTACGCAAGAAGTAGACTATTCTGATCCACTGCGTTACTTAAGAACAACAACTAGAACTACACGGCTTCTTACTCCAGCCGAAGAAATTAAGTATTCTGAAGGAATACAGGACTTGATAAAGCTTGAAAAACTCCAAGACGATCTTGTAGAAAAATGTGGGGGCGAGCCCACATTTGGTCAATGGGCTACACTGGCAGGGGTAGATCAGAAAACCCTAAGAAAACGTTTAAATTATGGTGTATTTTGCAAAGAAAAAATGATTAAAAGCAATATACGACTTGTGATATCAGTTGCTAAAAATTATCAGGGATCTGGGATGAGTCTTCAAGATCTAGTCCAGGAAGGATGCCGCGGCCTTGTAAGAGGTGCAGAGAAGTATGATGCTTCTAAGGGTTTTAAGTTCTCAACCTATGCTCATTGGTGGATTAAACAGGCAGTTCGGAAAGCACTTTCTGTTCAGTCAAGAACTATTCGTTTGCCATTCCACATGGTGGGAGCAACATACAAAGTGAAGGAGGCAAGAAAACAACTGTACAGTGAAAATGGAAGACAGCCTGACGATGAAGAAGTTGCCGAAGCTACTGGGCTGTCAATGAAGAGGCTTAGTGCTGTACTTTTGACCCCAAAAGCTCCCAGATCTTTGGAACAGAAGATTGGGATCAACCAGAGTCTTAAACCTTCAGAAGTACTTGCTGATCCTGAAGCTGAAACGGCTGAAGAGCAGTTGATTAAGCAATTCATGAAAAAGGACCTGGAAAAGGTACTGGACAGTCTGAATCCAAGAGAGAGACAAGTGATTAGATGGAGATTTGGTATGGATGATGGAAGGATGAAAACCCTGCAAGAGATAGGGGAAATGATGGGTGTGAGTAGGGAGAGAATTAGACAAATTGAGTCCTGTGCTTTTAGGAAGCTTAAGAACAAGAAGAGAGCCAAGCATTTGCAGCAGTATTTGGTTTCATAA 2619 0.4414 MYFCGAKWMSASVSQSPLIPSKCSNQSLISSSSSNNYRPAVILPGLGNNSGDYQKLEATLKENYGVSTVVAKVSRLDWLRNAAGLIDSNYWRGTLEPTPVLDWYLKRVDDAVQEAKDLAPDSTLSFIGHSAGGWLARLYMQQFGISDISLLLTLGTPHLPAPKGVPGVIDQTRGLLDYVEKYCSKAVYTPQLKYVCIAGRYIEGAPLFGKSNPNAESQGVLPTNSSQLLPEAAIINAAITSPNTTLRARFVGQGYKQVCGQANVWGDGVVPQVSAHLEGALNICLDGVYHSPVGSDDAIRPCLGFGGRMSCLLPQFNCHPDTFRTPLPTHRHHLILLLQTKTRHNLYFRPQCILSAAPPSTSALIDFDVAAAAAAANSPNWPYVAQAHFKATSSAESLLTNEEAVIAAAASEALTLAKAAAKVAKDAALLVKKKPLQEAGFKSQLPSTPDNFLLKWVQHMEAQEAVAGGGSVSNGAEILEDVDISPNQEELDEEEPTCEELENSEEQLSDSIDARSGRQTERKARRVRASGKAATNIVSFKSGSTSRKRRVRTQEVDYSDPLRYLRTTTRTTRLLTPAEEIKYSEGIQDLIKLEKLQDDLVEKCGGEPTFGQWATLAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAVRKALSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQSLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNPRERQVIRWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRAKHLQQYLVS 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03460 872 Gene3D RNA Polymerase Primary Sigma Factor 455 710 - -
Car05g03460 872 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 636 860 IPR014284 GO:0003700|GO:0006352|GO:0006355
Car05g03460 872 Gene3D - 792 872 IPR036388 -
Car05g03460 872 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 339 871 - -
Car05g03460 872 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 770 869 IPR013324 -
Car05g03460 872 PRINTS Major sigma-70 factor signature 686 694 IPR000943 GO:0003700|GO:0006352|GO:0006355
Car05g03460 872 PRINTS Major sigma-70 factor signature 831 846 IPR000943 GO:0003700|GO:0006352|GO:0006355
Car05g03460 872 PRINTS Major sigma-70 factor signature 846 857 IPR000943 GO:0003700|GO:0006352|GO:0006355
Car05g03460 872 PRINTS Major sigma-70 factor signature 810 822 IPR000943 GO:0003700|GO:0006352|GO:0006355
Car05g03460 872 PRINTS Major sigma-70 factor signature 662 675 IPR000943 GO:0003700|GO:0006352|GO:0006355
Car05g03460 872 MobiDBLite consensus disorder prediction 508 528 - -
Car05g03460 872 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB 339 871 - -
Car05g03460 872 Pfam Sigma-70 region 2 638 707 IPR007627 GO:0003700|GO:0006352|GO:0006355
Car05g03460 872 MobiDBLite consensus disorder prediction 484 507 - -
Car05g03460 872 Gene3D alpha/beta hydrolase 37 302 IPR029058 -
Car05g03460 872 Gene3D - 711 788 IPR036388 -
Car05g03460 872 CDD Sigma70_r4 800 858 - -
Car05g03460 872 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 559 708 IPR013325 GO:0003700|GO:0006352|GO:0006355
Car05g03460 872 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 706 757 IPR013324 -
Car05g03460 872 Pfam Sigma-70 region 3 719 793 IPR007624 GO:0003700|GO:0006352|GO:0006355
Car05g03460 872 SUPERFAMILY alpha/beta-Hydrolases 38 290 IPR029058 -
Car05g03460 872 MobiDBLite consensus disorder prediction 484 530 - -
Car05g03460 872 Pfam Sigma-70, region 4 806 858 IPR007630 GO:0003700|GO:0006352|GO:0006355
Car05g03460 872 ProSitePatterns Sigma-70 factors family signature 2. 831 857 IPR000943 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03460 Car-Chr5 79061442 79070376 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03460 - - aprc:113864822 769.229