Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03456 ATGACGATCCATTCTGTATTGATACAGAAGCTACTGAGCACCAATGCCCACATTGGCCGTCAAGTTGCAACTCATCATTTCAAAGAATACACTTACGGCTTCCGCAACAAAATGGCCATTATCGATTCCGACAAGACCTTAATTTGCATGCGCAGTGCCTTCAACTTCATTTCTTCTCTCGCGCGTCAAAATGGACGCTTCATGTTCATCAACACCAACCCTCTCTTCGATGAAATCTTCGAACTTATGTCCAAAAAAGTCGGTTGTTACAGTCCTTCTTCCAACGTTCTTTGGCGCACTGGTGGGTTCCTCACCAACAGTTACAGCCCTAAGAAGTTTCGTTCTCGCAACAAGAGGCTTTGTTTCGGTCCCACTCAGCCACCTGATTGCATCGTCATTGTCGACACTGAGAGTAAATCTTCTGTCATCAACGAAGCTTTCAAACTTAACATTCCAATTGTCGCTCTTGTCGATTCTGCAATGCCCATCCATACTTTCAATCGCATTGCTTATCCCATTCCCGTTAATCCTTCTGTTCAATTTGTTTATTTGTTTTGTAATTTGATTACCAAAACACTGCTTCTTGAGAAGAACAAGTTGCAGCTTTCTAATCCCAAAATTGATGACAGAGATGAAGCTACCAAAGTTGAAGATAACAAGAAAAAGAATAATTTGGCTAAGGTTGGCATCACTGTTATCCCCTACGATAGTTTAGCACCCTTGCCAGAAGATATAGAAGAAACTAAGAAGCTTTTGGATAAGCTTGTTGTTTTGAAGGTCAATCATGCCTCTGGAAGAAATATGGGTTTTGAAAACCCCAAGTCTGCAATAGATATTTGTGATGGAAAGACATTTCTAGACTTGATCATTAACCAGATTGAGACCCTCAACTCCAAGTATGAGTGCCAAGTTCCATTGCTTATTTTTAACAAAGATGACACTCACGATAGTACTTTAAAGGTTTTGGAGAAGTATTCAGAGTCAAGCATTGATGTGCGCACTTTTAAGCAGGGTGAAGATCCAAAGTTAGCCTTATCAAGTGAACATAGCAGCAAGGGGGAAGTGCATACATTTGACGATGGTGATATTTTCCGTTCACTAATGATAGGTGGAACCCTTGATTTATTATTGTCTCAGGGAAAAGAATATATCCTTGTGATGAAGTCAGACAATGTGGCTACAATCGTTGATCCAAGTATACTAAATCATTTGATGACAAATGCTATTGATTATTGCATGGAGGTGACACCAAGCCATACATTTAATGTGATATTAACTCCAATGAATTTTAAGCTTCAAGAGATTGCTCGAAATCAAGATAAACATTTGAAGGACAAATTCAAACTCATCGATACAACAAACATGTGGGTGAGTTTAAGAGCCATTAAGAGACTAATTGATTCTAACAAACTAAAGCTCAAGAAGCCCTCAAGTTTGAAGGAGAATGACTATGATCAAACTCTTCTGCAAGAAACAGATACCGGACCTGCAGTACAGTTCTTTGAGAGTGTAATTGGTGTCTCAATACCTGAATCTCGCTTTCTTCCCTTGGATGCAACATCGGATTTACTGCTTCTACAGTCAGACCTATACACTCTTAGAGAAGGTGCTTTAACTCGTAATCCAGCTAGAACCAACCCTTTAAATCCTGTGATTGATTTTGGACCCGAATTTGAAAAGATTGGTGACTTTGAAGGTCGGTTCAGATCCATTCCAAGTATCACGGGGTTGGATAGTTTGATTGTGAGAGGTGATGTGTGGTTTGGAGCTAATATTACTTTAAAGGGACACGTGACTATTGTTGCAAAACCTGGCTTGAAATTGGAAATTCCAGATGGAGTGGTAATTGAGAATAAGGAGATCAATGACCCTGCAGATATCCTAGGATGA 1890 0.3979 MTIHSVLIQKLLSTNAHIGRQVATHHFKEYTYGFRNKMAIIDSDKTLICMRSAFNFISSLARQNGRFMFINTNPLFDEIFELMSKKVGCYSPSSNVLWRTGGFLTNSYSPKKFRSRNKRLCFGPTQPPDCIVIVDTESKSSVINEAFKLNIPIVALVDSAMPIHTFNRIAYPIPVNPSVQFVYLFCNLITKTLLLEKNKLQLSNPKIDDRDEATKVEDNKKKNNLAKVGITVIPYDSLAPLPEDIEETKKLLDKLVVLKVNHASGRNMGFENPKSAIDICDGKTFLDLIINQIETLNSKYECQVPLLIFNKDDTHDSTLKVLEKYSESSIDVRTFKQGEDPKLALSSEHSSKGEVHTFDDGDIFRSLMIGGTLDLLLSQGKEYILVMKSDNVATIVDPSILNHLMTNAIDYCMEVTPSHTFNVILTPMNFKLQEIARNQDKHLKDKFKLIDTTNMWVSLRAIKRLIDSNKLKLKKPSSLKENDYDQTLLQETDTGPAVQFFESVIGVSIPESRFLPLDATSDLLLLQSDLYTLREGALTRNPARTNPLNPVIDFGPEFEKIGDFEGRFRSIPSITGLDSLIVRGDVWFGANITLKGHVTIVAKPGLKLEIPDGVVIENKEINDPADILG 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03456 629 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 196 517 IPR029044 -
Car05g03456 629 CDD RPS2 11 194 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g03456 629 SUPERFAMILY Ribosomal protein S2 8 200 IPR023591 -
Car05g03456 629 Gene3D Hexapeptide repeat proteins 518 627 - -
Car05g03456 629 Pfam Ribosomal protein S2 11 108 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g03456 629 Pfam Ribosomal protein S2 126 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g03456 629 Pfam UTP--glucose-1-phosphate uridylyltransferase 211 595 IPR002618 GO:0070569
Car05g03456 629 ProSitePatterns Ribosomal protein S2 signature 1. 8 19 IPR018130 GO:0003735|GO:0005840|GO:0006412
Car05g03456 629 Gene3D - 2 195 - -
Car05g03456 629 PANTHER - 1 627 IPR016267 GO:0003983|GO:0006011
Car05g03456 629 PRINTS Ribosomal protein S2 signature 8 26 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g03456 629 PRINTS Ribosomal protein S2 signature 128 145 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g03456 629 PRINTS Ribosomal protein S2 signature 145 156 IPR001865 GO:0003735|GO:0005840|GO:0006412
Car05g03456 629 PANTHER UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 1 627 - -
Car05g03456 629 SUPERFAMILY Nucleotide-diphospho-sugar transferases 218 604 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03456 Car-Chr5 79026466 79036766 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03456 K00963 - gmx:100812583 903.279