Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03438 ATGATGCATCAACATATACTTTTCTTTCTTCTAGGGGTTTCTCTAGTTACTTCCTTCTATGATGGACCCCTATATGACTCTACTGCTTACACTGAGTGCAAAGAACAACCTGAGAAGCCACTTTACGGAGGAGGAGTTTTCCACAGTACTGACATTGCAGATGGGAACGTCGTTTTCTTCTATAATCTTACTCACAACTCCATCTATTCTTTTTCTGCATGGCTGAGGGTTCAAAATTCAGATTCAGCTATGATAAGGGCGAGTCTGGAAACGGAAAATGAGACGGATAACTGTATTGGGACAGTTTCCGTTAAACGTGGATGCTGGTCATTTCTCAAAGGTGGTTTTGTTCTCAATTCGCCTTCAAATTTGTCTACGATCTATTTTAAGAATGCAGATGGCAAAGATGTTGATATAGATATAGCAAGTCCATCACTGCAGCCATTTACTAAGCAGCAATGGACAATCAATCAACAATATATCATCAATAATAAAAGAAAGCGTGCAGTCACTATTCATGTATCAGATACTCATGGAACAAAATTGGAAGGAGCTTCCGTGTTCGTAGAGCAAATATCAAAAGACTTTCCTATTGGTTCTGCCATATCAAAAACCATTCTTGGCAACTTGCCATATCAGGATTGGTTTGTGAAGCGGTTCAATGCTGCAGTGTTTGAAAATGAGCTCAAATGGTATGCCACAGAGCCTCATGAAGGCAAAATCAATTACACCATTTCAGACCAAATGATGCAATTTGTTAGAGCAAACAAAATCATAGCTAGAGGACACAATATATTCTGGGAAGATCCTAAATACACTCCTGCATGGGTTCTTAACCTTACATCTACCCAATTACAATCTGCTATAAATTCTCGAATACAAAGTCTCATGAACCAATACAAACAAGAGTTCATACACTGGGATGTCAGCAATGAAATGCTTCATTTTGATTTCTATGAACAAAGGCTTGGAACCAATGCTACATTTCATTTCTTTGAGGCAGCACATGAATCAGATCCCTTAGCAACTCTGTTTATGAATGACTTTAATGTTGTGGAAACTTGCAATGATGTGAATTCTACTGTTGATGCTTATATCTTAAGGATAAGGGAACTAAGACAACATGGTGTGTTTATGGATGGAATTGGATTGGAGGGTCATTTTACAAAACCAAATCCTCCACTTATCAGAGCTATCTTAGACAAGTTGGCAACATTGGATCTTCCAATTTGGCTTACTGAGATTGATATAAGCAAGACACTTGATAAAGATACTCAGGCAATTTATTTGGAACAAGTGTTGAGGGAAGGTTTCTCACACCCTTCTGTGAATGGGATAATGCTTTGGACCGCACTTCATCCAAATGGGTGCTACCAAATGTGTCTCACAGACAATGATTTCAATAACTTACCATCAGGTGATGTGGTGGACAAACTTCTTGAAGAGTGGCAAACTGAACGTGTAGAGGGAGTCACGGACGAGCATGGTTCCCATAGTTTTTATGGGTTCTTAGGAGAATATAAAATTAGTGTTGAGTATGGCAATAGAACTATAAATTCAACCTTCTCTCTGTGTAGAGGTGAAGAAACTAGACATGTCACGGTTACACTCTGA 1614 0.3879 MMHQHILFFLLGVSLVTSFYDGPLYDSTAYTECKEQPEKPLYGGGVFHSTDIADGNVVFFYNLTHNSIYSFSAWLRVQNSDSAMIRASLETENETDNCIGTVSVKRGCWSFLKGGFVLNSPSNLSTIYFKNADGKDVDIDIASPSLQPFTKQQWTINQQYIINNKRKRAVTIHVSDTHGTKLEGASVFVEQISKDFPIGSAISKTILGNLPYQDWFVKRFNAAVFENELKWYATEPHEGKINYTISDQMMQFVRANKIIARGHNIFWEDPKYTPAWVLNLTSTQLQSAINSRIQSLMNQYKQEFIHWDVSNEMLHFDFYEQRLGTNATFHFFEAAHESDPLATLFMNDFNVVETCNDVNSTVDAYILRIRELRQHGVFMDGIGLEGHFTKPNPPLIRAILDKLATLDLPIWLTEIDISKTLDKDTQAIYLEQVLREGFSHPSVNGIMLWTALHPNGCYQMCLTDNDFNNLPSGDVVDKLLEEWQTERVEGVTDEHGSHSFYGFLGEYKISVEYGNRTINSTFSLCRGEETRHVTVTL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03438 537 Gene3D - 45 143 - -
Car05g03438 537 Gene3D Glycosidases 186 495 - -
Car05g03438 537 PANTHER GLYCOSYL HYDROLASE FAMILY 10 PROTEIN 5 535 - -
Car05g03438 537 PANTHER GLYCOSYL HYDROLASE 5 535 IPR044846 GO:0004553|GO:0005975
Car05g03438 537 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 183 479 IPR001000 GO:0004553|GO:0005975
Car05g03438 537 SUPERFAMILY Galactose-binding domain-like 50 139 IPR008979 -
Car05g03438 537 PRINTS Glycosyl hydrolase family 10 signature 260 272 IPR001000 GO:0004553|GO:0005975
Car05g03438 537 PRINTS Glycosyl hydrolase family 10 signature 304 315 IPR001000 GO:0004553|GO:0005975
Car05g03438 537 PRINTS Glycosyl hydrolase family 10 signature 342 353 IPR001000 GO:0004553|GO:0005975
Car05g03438 537 PRINTS Glycosyl hydrolase family 10 signature 375 387 IPR001000 GO:0004553|GO:0005975
Car05g03438 537 SUPERFAMILY (Trans)glycosidases 183 487 IPR017853 -
Car05g03438 537 Pfam Glycosyl hydrolase family 10 191 450 IPR001000 GO:0004553|GO:0005975
Car05g03438 537 SMART glyco_10 229 480 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03438 Car-Chr5 78859908 78862656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03438 21 537 Glycoside Hydrolase AT4G38650 64.794 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03438 - - gmx:100806005 892.493