Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03415 ATGAGTTccgacagccgcagccgaagcagaagcaggagtcggagccCAGGGGTCCGTAAGATTCGTTCTGATCGATTTTCCTTTCGCGATGCCCCTTACAGGAGAGATTCAAGTCGGGGTTTCAGCCGAGACAATTTGTGCAAGaactgcaagaggcctggtcattatgctagagaatgccctaaTGTTGCCGTGTGCCACAATTGTGGCCTCCCTGGGCACATTGCTTCTGAATGCTCCACGAAATCACTGTGCTGGAATTGTAAAGAACCTGGCCACATGGCCAACAGTTGTCCAAATGAGGGCATTTGCCACACCTGTGGTAAAGCTGGACACCGTGCTAGGGAGTGCTCAGCTGCTCCAATGCCTCCTGGGGACTTAAGGTTGTGCAATAACTGTTATAAACAGGGCCACATTGCTGTTGAATGTACCAATGagaaggcttgcaacaattgtaggaaaacagggcacttggcacgtgattgtccaaatgacccaatttgcaacttgtgcaatgtttctggacatgtggctagacaatgtccaaaatccaATGTCCTTGGTGACCACAGTGGCAGAGGAGGAAGCCTTCgtggtggtggcggcgggggtggtggcggtTATCGAGATGTTGTGTGCAGGAACTGCCAGCAATTGGGTCACATGAGTCGAGACTGCATGGGGCCATTGATGATTTGTCACAATTGTGGAGGTCGTGGTCACTTGGCATATGAGTGTCCGTCTGGTCGGTTTGTGGATCGCTACCCTAGTAGGAGGTACTAG 783 0.3602 MSSDSRSRSRSRSRSPGVRKIRSDRFSFRDAPYRRDSSRGFSRDNLCKNCKRPGHYARECPNVAVCHNCGLPGHIASECSTKSLCWNCKEPGHMANSCPNEGICHTCGKAGHRARECSAAPMPPGDLRLCNNCYKQGHIAVECTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDHSGRGGSLRGGGGGGGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFVDRYPSRRY 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03415 260 Pfam Zinc knuckle 65 80 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 Pfam Zinc knuckle 167 183 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 Pfam Zinc knuckle 148 164 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 Pfam Zinc knuckle 232 248 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 Pfam Zinc knuckle 212 226 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 Pfam Zinc knuckle 46 62 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 Pfam Zinc knuckle 103 118 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 Pfam Zinc knuckle 85 100 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 Gene3D - 209 250 - -
Car05g03415 260 Gene3D - 82 101 - -
Car05g03415 260 ProSiteProfiles Zinc finger CCHC-type profile. 85 100 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 SMART c2hcfinal6 212 228 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 SMART c2hcfinal6 84 100 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 SMART c2hcfinal6 103 119 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 SMART c2hcfinal6 65 81 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 SMART c2hcfinal6 167 183 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 SMART c2hcfinal6 232 248 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 SMART c2hcfinal6 46 62 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 Pfam Zinc knuckle 129 146 - -
Car05g03415 260 ProSiteProfiles Zinc finger CCHC-type profile. 66 79 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 ProSiteProfiles Zinc finger CCHC-type profile. 233 248 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 Gene3D - 102 146 - -
Car05g03415 260 ProSiteProfiles Zinc finger CCHC-type profile. 168 183 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 PANTHER OS10G0545300 PROTEIN 1 260 - -
Car05g03415 260 Gene3D - 25 81 - -
Car05g03415 260 ProSiteProfiles Zinc finger CCHC-type profile. 213 226 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 SUPERFAMILY Retrovirus zinc finger-like domains 203 249 IPR036875 GO:0003676|GO:0008270
Car05g03415 260 MobiDBLite consensus disorder prediction 1 26 - -
Car05g03415 260 ProSiteProfiles Zinc finger CCHC-type profile. 104 117 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 PANTHER - 1 260 - -
Car05g03415 260 SUPERFAMILY Retrovirus zinc finger-like domains 125 165 IPR036875 GO:0003676|GO:0008270
Car05g03415 260 Gene3D - 147 186 - -
Car05g03415 260 ProSiteProfiles Zinc finger CCHC-type profile. 47 62 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 ProSiteProfiles Zinc finger CCHC-type profile. 149 164 IPR001878 GO:0003676|GO:0008270
Car05g03415 260 SUPERFAMILY Retrovirus zinc finger-like domains 38 82 IPR036875 GO:0003676|GO:0008270
Car05g03415 260 SUPERFAMILY Retrovirus zinc finger-like domains 83 120 IPR036875 GO:0003676|GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03415 K09250 - gmx:100775501 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03415 05 78668619 78674678 Car05g03415 05 78668619 78674678 ECH