Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03411 ATGGAAGCTATCAGAAAACAAGCCTCCAAGCTTCGAGAACAAGTCGCTCGCCAACAACAGGCTGTGCTGAAACAGTTTGGGGCTGGGGGATATGGAGGTTCGGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCGACACGTGCAGGAAAGCATTATCAAAGGGATATTGTCCGTGGAGTAGAAGGTTATATTGTTACTGGATCAAAGCAAGTTGAAATAGGAACAAAGTTGTCAGAAGATAGCAGGAAATATGGTTCAGAAAATACATGTACCAGTGGTAGTACCTTATCAAGAGCTGCACTAAATTATGCACGTGCCCGTGCACAAATGGAGAAGGAACGTGGGACCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTAAGAGCAATGGTGATGGGTGCTCCTTTGGAGGATGCTAGGCATCTTGCTCAACGTTATGACAGAATGCGACAGGATGCTGAAGCCCAGGCTATTGAAGTTTCTAAACGCCAGGCAAAAGTTAGGGAAACACCAGGCAATGCTGAGAATGCTATGAAACTGGAAGCAGCTGAAGCAAAGCTGCAAGACCTAAAGTCAAACATGGCCATATTGGGGAAGGAAGCAGCTGCAGCAATGACTGCCGTTGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCGTGCCTACCACCAAAGAGTGCTCCAAATACTTGATCATCTTGAGGGAGAGATGATATCAGAACGGCAGCGTATTGAAGCCCCTCCTACTCCTAGTGTGGATAACAACATGCCACCACCTCCATCATATGAAGAAGTGAATGGTGTCTATGCTTCTCAGGAACGTAATGGCGTAACAGACAGTATGGGCTACTTCTTAGGAGAGGTTTTATTTCCTTATCATGCTGAGTCTGAAATTGAGCTGAATTTATCAGTTGGGGATTATATTGTCATTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGGTGGTTTCCATTTGGTTACATTGAAAGGAGGGACCGAGTCCTTGCAAGCAAGGTTTCTGAAGTGTTTTAA 1116 0.4534 MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSENTCTSGSTLSRAALNYARARAQMEKERGTLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQDAEAQAIEVSKRQAKVRETPGNAENAMKLEAAEAKLQDLKSNMAILGKEAAAAMTAVEAQQQRLTLQRLIAMVEAERAYHQRVLQILDHLEGEMISERQRIEAPPTPSVDNNMPPPPSYEEVNGVYASQERNGVTDSMGYFLGEVLFPYHAESEIELNLSVGDYIVIRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLASKVSEVF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03411 371 PANTHER PROTEIN, PUTATIVE-RELATED 1 371 - -
Car05g03411 371 ProSiteProfiles Src homology 3 (SH3) domain profile. 302 361 IPR001452 GO:0005515
Car05g03411 371 Coils Coil 1 21 - -
Car05g03411 371 Gene3D SH3 Domains 291 369 - -
Car05g03411 371 PANTHER SH3 DOMAIN-CONTAINING 1 371 - -
Car05g03411 371 Coils Coil 186 213 - -
Car05g03411 371 SMART SH3_2 305 360 IPR001452 GO:0005515
Car05g03411 371 Gene3D Arfaptin homology (AH) domain/BAR domain 45 267 IPR027267 -
Car05g03411 371 SUPERFAMILY BAR/IMD domain-like 47 258 IPR027267 -
Car05g03411 371 Coils Coil 220 240 - -
Car05g03411 371 Pfam Variant SH3 domain 309 357 IPR001452 GO:0005515
Car05g03411 371 SUPERFAMILY SH3-domain 264 360 IPR036028 GO:0005515
Car05g03411 371 Coils Coil 149 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03411 Car-Chr5 78632389 78637715 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03411 - - gmx:100783004 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03411 05 78632389 78637715 Car05g03411 05 78632389 78637715 ECH