Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03405 ATGACCGCATCCTTCTCTACACTTTCTCTCAATCATTCACAAGAAATTACTATTTCAGTTACTGATTATCGCAAAAAGCTCCTCCAACACAAGGAGCTTCATTCCAGAGTTCGATCAGTTAGAGATAATTTGCGGAATGCGAACAAGGATTTCGACAAAACAGAGGATGATTTGAAGTCCTTTCAGAGTGTTGGTCAAATCGTTGGCGATGTTCTTAGGCCTCTTGATCATCAACGAATGATCGTTAAAGCAAGCAGTGGACCAAGATACGTAGTTGGCTGTCGTAGTAAAGTAGACAAGGAGAAGCTGACTTCAGGAACTCGAGTTGTGCTGGATATGACAACACTAACCATTATGCGAATTCTTCCCCGTGAAGTTGACCCAGTTGTATATAATATGCTACATGAAGACCCTGGAAATGTTAGTTACTCTGCAGTTGGAGGGCTTTCAGATCAGATTCGAGAACTCAGGGAATCAATTGAACTGCCTCTAATGAATCCTGAGCTTTTTCTTAGGGTCGGAATCAAACCACCCAAGGGTGTTCTTCTTTATGGACCTCCTGGAACTGGGAAGACATTATTAGCAAGAGCAATCGCCAGCAACATTGATGCTAACTTCTTGAAGGTTGTATCCAGTGCTATAATTGATAAATATATTGGTGAAAGTTCAAGACTGATTAGGGAAATGTTTGGTTATGCTCGTGATCATCAGCCTTGCATCATATTCATGGATGAAATTGATGCCATTGGTGGACGGCGTTTCAGTGAGGGCACAAGTGCTGATCGTGAAATTCAAAGAACACTCATGGAGCTTCTTAACCAGCTGGATGGATTTGATCAGCTTGGAAAGGTTAAAATTATTATGGCTACAAATAGGCCTGATGTTCTTGACCCAGCCCTTCTTCGCCCGGGTCGACTTGATCGAAAAATTGAAATCCCATTGCCAAATGAGCAGTCAAGGATGGAAATCCTCAAAATCCATGCTGCTGGAATTGCAAAGCATGGTGAAATTGACTACGAAGCAGTCGTGAAGCTTGCTGAGGGGTTCAATGGTGCTGATCTTCGTAATGTTTGCACTGAAGCTGGGATGTTTGCAATTCGTGCAGAACGTGATTATGTAATTCATGAAGATTTCATGAAGGCCGTTCGCAAACTGAATGAAGCAAAGAAACTAGAATCAAGCGCCCATTATAATGCTGATTTTGGGAAAGATTAA 1215 0.4198 MTASFSTLSLNHSQEITISVTDYRKKLLQHKELHSRVRSVRDNLRNANKDFDKTEDDLKSFQSVGQIVGDVLRPLDHQRMIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRILPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESSRLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMFAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFGKD 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03405 404 PANTHER - 21 391 - -
Car05g03405 404 SMART AAA_5 177 316 IPR003593 -
Car05g03405 404 Pfam ATPase family associated with various cellular activities (AAA) 181 314 IPR003959 GO:0005524|GO:0016887
Car05g03405 404 CDD AAA 147 314 - -
Car05g03405 404 Gene3D - 315 385 - -
Car05g03405 404 Coils Coil 30 64 - -
Car05g03405 404 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 21 391 - -
Car05g03405 404 Gene3D - 134 314 IPR027417 -
Car05g03405 404 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 29 385 IPR005937 GO:0005737|GO:0030163|GO:0036402
Car05g03405 404 Pfam Proteasomal ATPase OB C-terminal domain 68 123 IPR032501 -
Car05g03405 404 ProSitePatterns AAA-protein family signature. 284 302 IPR003960 GO:0005524|GO:0016887
Car05g03405 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 389 IPR027417 -
Car05g03405 404 Gene3D - 29 133 IPR012340 -
Car05g03405 404 Pfam AAA+ lid domain 337 379 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03405 Car-Chr5 78575492 78578917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03405 140 384 Miscellaneous Gene Families AT3G47060 39.200 9.20e-54 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03405 K03064 - ming:122068471 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03405 05 78575492 78578917 Car05g03405 05 78575492 78578917 ECH