Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03396 ATGTGTGACCTTATGTCCGCAACTCTTGACCGACCTGTCAAACTAGGTGGTCATGAAATGGAACATTCTGAGGATGAAAAGAAGAAAAGGGTTGGATCGATAAAGAAGGTGGCAATCAGTGCCTCAAGTAAGTTCAAGCATTCCTTCACAAAGAAGGGAAGGAGGCACAGCAGGGTTATGTCTGTCTCTTTTGAGGATGATTTTGATGCTGAAGAGCTGCAGGCAGTTGACGCTTTTCGCCAAACACTTATCTTGGAAGAGCTATTACCCTCAAAACATGATGATCCTCATATGATGCTAAGATTTTTGAGGGCAAGAAAGTATGACATAGAGAAGACAAAACAAATGTGGTCAGATATGCTTAAGTGGAGGAAGGAATTTGGTGCTGACACTATCATGGAGGATTTCGAATTTAAGGAACTAGATGAAGTTCTGAAATACTATCCACAAGGTCATCACGGAGTTGACAAAGAAGGACGACCGGTTTACATCGAAAGATTGGGTCAGGTTGATTGTAACAAGTTGTTGCAAGTAACATCGGTCGAACGTTATCTGAAGTACCATGTAAGAGAGTTTGAGAGGACTTTTGCTGTGAAGTTGCCTGCTTGTTCAATTGCAGCAAAGAAGCACATTGATCAAAGCACAACTATTTTGGATGTGCAAGGAGTGGGTCTTAAAAGTATGAACAAAGCTGCAAGGGATCTCCTCCAGCGGCTTCAGAAGATTGATGGTGACAACTATCCCGAGTCCTTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTGTGGAACACTGTTAAGTCATTCTTAGATCCCAAGACTACCTCAAAAATCCATGTCCTAGGTAACAAATACCAAAGCAAGTTGCTTGAAATCATTGATGCCAGtgaacttccagaattcttgggtggtacttgtacttgtgcagataaaggtggctgcatgctatctgacaagggaccgtggaacgatccagagatcttgaagATGGCTCAAAATGGCGTCGGCAAATGTACAAGAAATGCCTTATCGGGGATTGAGGAGAAAACAATCAGACAAGATGAAACTGCATATCAGAAGGGATTCAGAGACTCATTTCCAGAGACACACGATGTTCATTGTTTGTCCCAGGAACAACCCAAATCCTATGGTGTTGCAAAACAATGTGGTGTTTATCAGTATGATTCCTATGTTCCAGTACTTGACAAATCAGTCGATTCATCTTGGAAGAAAACAACACATAATGACAAATTTGCACTTTCTAAAGCTGCAGATTGTTTCCCCAACAATAATGAAAAGAATTCTGGTAGGATTGGCAGTCAATTTGTGGGTGGAATAATGGCCCTTGTTATGGGAATTGTAACCATGATCCGCATGACAAGTAGCATGCCAAGGAAACTCACTGAAGCAGCACTGTATGGTAACTCAGAATATTATGATGGCACCATGATGAAAGCACCTGCCATTTCAAGCAATGAGTACATGGCCATGATGAAGCGCATGGCTGACCTTGAAGAAAAAGTTACTATTCTCAGTGTTAGGCCCTCCATGCCTCCAGAAAAAGAGGAAATGCTAAATAATGCTCTAACCAGGGTCACTTCTCTTGAACAAGAGTTGGCTGCAACCAAAAAGGCACTAGATGACGCCCTTGTTAGACAAATAGAACTCCAAGCTCAAATTGACAAGAAGAAAAAGAAGAAGTTGTTCCGCTTCCACTGGTAA 1734 0.3933 MCDLMSATLDRPVKLGGHEMEHSEDEKKKRVGSIKKVAISASSKFKHSFTKKGRRHSRVMSVSFEDDFDAEELQAVDAFRQTLILEELLPSKHDDPHMMLRFLRARKYDIEKTKQMWSDMLKWRKEFGADTIMEDFEFKELDEVLKYYPQGHHGVDKEGRPVYIERLGQVDCNKLLQVTSVERYLKYHVREFERTFAVKLPACSIAAKKHIDQSTTILDVQGVGLKSMNKAARDLLQRLQKIDGDNYPESLNRMFIINAGSGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCMLSDKGPWNDPEILKMAQNGVGKCTRNALSGIEEKTIRQDETAYQKGFRDSFPETHDVHCLSQEQPKSYGVAKQCGVYQYDSYVPVLDKSVDSSWKKTTHNDKFALSKAADCFPNNNEKNSGRIGSQFVGGIMALVMGIVTMIRMTSSMPRKLTEAALYGNSEYYDGTMMKAPAISSNEYMAMMKRMADLEEKVTILSVRPSMPPEKEEMLNNALTRVTSLEQELAATKKALDDALVRQIELQAQIDKKKKKKLFRFHW 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03396 577 SMART CRAL_TRIO_N_2 95 120 IPR011074 -
Car05g03396 577 Pfam CRAL/TRIO domain 146 308 IPR001251 -
Car05g03396 577 SMART sec14_4 140 311 IPR001251 -
Car05g03396 577 SUPERFAMILY CRAL/TRIO domain 140 336 IPR036865 -
Car05g03396 577 MobiDBLite consensus disorder prediction 14 32 - -
Car05g03396 577 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 7 571 - -
Car05g03396 577 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 7 571 - -
Car05g03396 577 PRINTS Cellular retinaldehyde-binding protein signature 98 120 - -
Car05g03396 577 PRINTS Cellular retinaldehyde-binding protein signature 267 286 - -
Car05g03396 577 PRINTS Cellular retinaldehyde-binding protein signature 300 309 - -
Car05g03396 577 Coils Coil 529 556 - -
Car05g03396 577 Pfam CRAL/TRIO, N-terminal domain 92 119 IPR011074 -
Car05g03396 577 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 140 314 IPR001251 -
Car05g03396 577 CDD SEC14 141 309 IPR001251 -
Car05g03396 577 Gene3D - 128 339 IPR036865 -
Car05g03396 577 MobiDBLite consensus disorder prediction 1 32 - -
Car05g03396 577 Gene3D - 35 127 - -
Car05g03396 577 SUPERFAMILY CRAL/TRIO N-terminal domain 65 136 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03396 Car-Chr5 78517634 78523408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03396 74 305 Acyl Lipid Metabolism Gene Families AT5G47730 29.046 5.53e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03396 - - gmx:100798374 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03396 05 78517634 78523408 Car05g03396 05 78517634 78523408 ECH