LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car05g03390	ATGGCGTCTGGTTGTGTGACCTTAAAAGCTAACACCCATTGTATAGATTCAAAAAAAGGTTCTTTTTTTGGTGATAGAATCAAAGGAAGCTTCAACAACAGTTCCTGGGTCACGGATCAGTTGAATCAACGTTTGAGAACACAGAAGAAGATCAAACATGGTGCTTTATCTGCTATTCTTACTTCAGATGATCCTAAAGGATCCTTGACCTTGCAAGTGCCTTCATTCATGAGAGTAAGAGCTGATCCAAAGAATGTTATTTCCATTGTATTGGGAGGAGGACCAGGGACACATCTCTATCCTCTAACCAAACGAGCTGCGACACCTGCGGTTCCTGTTGGGGGGTGCTATAGGCTTATAGACATTCCAATGAGCAATTGCATCAACAGTGGCATCAACAAAATATTTGTGCTAACTCAGTTCAATTCCGCATCTCTCAACCGTCACATCGCTCGCACCTATTTTGGAAATGGCGTCAACTTTGGGGATGGATTTGTGGAGGTCCTGGCGGCGACACAAACACCAGGAGAAGCTGGAAAGAAGTGGTTTCAAGGAACTGCAGATGCTGTGAGGCAATTTACCTGGATATTTGAGGATGCCAAGAATATAAACGTTGATAATGTATTGATCTTGGCGGGGGATCATTTATACCGAATGGATTATATGGACCTTGTGCAGAGTCACATTGATAGAAATGCCGATATTACAATTTCGTGCGCTGCTGTTGGTGACAGCCGTGCATCGGATTATGGATTGGTCAAGGTAGACGACAGAGGCAACATCATCcaattttcagaaaaaccaaaggggaatgatctgaaagcaatgCAAGTAGATACCACTCTTCATGGTTTGTCGCCCCAAGATGCATTGAAGTCACCATATATTGCATCTATGGGGGTTTATGTATTCAAGAAAGATGTTTTACTCAAGCTTCTGAAATGGAGATATCCTACATCTAATGACTTCGGATCTGAAATCATTCCTTCAGCTATAAGGGAACACAATGTCAAAGCATATTTTTTCGGAGACTACTGGGAAGATATCGGAACAATAAAATCCTTTTACGATGCTAATCTTGCTCTTACTGAAGAGAGTCCAAAGTTTGAGTTTTATGATCCCAAGACACCTATTTTCACATCTCCAGGATTCCTACCACCAACAAAGATTGACAATTGCCGGGTGGTAGATGCCATTATCTCCCATGGATGTTTCCTGCGAGAGTGTACAATCCAACACTCCATTGTGGGCGAAAGATCGCGTTTAGATTATGGTGTCGAACTTCAGGAGACCGTAATGATGGGAGCAGACAATTACCAAACTGAATCCGAAATCGCTTCTCTACTCGCAGAGGGGAAGGTCCCTATTGGGATTGGAAGGAATACCAAAATTAGGAACTGCATTATAGACAAGAATGCAAAGATTGGGAAAGATGTCATCATCGCAAACAAAGATGGCGTTCAAGAAGCAGATAGATCAGAAGACGGGTTCTACATTCGATCAGGAATCACAATCATAATGGAGAAAGCAACCATAGAAGATGGAACTGTCATATAA	1557	0.4123	MASGCVTLKANTHCIDSKKGSFFGDRIKGSFNNSSWVTDQLNQRLRTQKKIKHGALSAILTSDDPKGSLTLQVPSFMRVRADPKNVISIVLGGGPGTHLYPLTKRAATPAVPVGGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFTWIFEDAKNINVDNVLILAGDHLYRMDYMDLVQSHIDRNADITISCAAVGDSRASDYGLVKVDDRGNIIQFSEKPKGNDLKAMQVDTTLHGLSPQDALKSPYIASMGVYVFKKDVLLKLLKWRYPTSNDFGSEIIPSAIREHNVKAYFFGDYWEDIGTIKSFYDANLALTEESPKFEFYDPKTPIFTSPGFLPPTKIDNCRVVDAIISHGCFLRECTIQHSIVGERSRLDYGVELQETVMMGADNYQTESEIASLLAEGKVPIGIGRNTKIRNCIIDKNAKIGKDVIIANKDGVQEADRSEDGFYIRSGITIIMEKATIEDGTVI	518

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car05g03390	518	SUPERFAMILY	Trimeric LpxA-like enzymes	381	518	IPR011004	-
	Car05g03390	518	ProSitePatterns	ADP-glucose pyrophosphorylase signature 1.	92	111	IPR005836	GO:0005978\|GO:0008878
	Car05g03390	518	CDD	LbH_G1P_AT_C	386	512	-	-
	Car05g03390	518	ProSitePatterns	ADP-glucose pyrophosphorylase signature 2.	182	190	IPR005836	GO:0005978\|GO:0008878
	Car05g03390	518	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE	1	518	-	-
	Car05g03390	518	ProSitePatterns	ADP-glucose pyrophosphorylase signature 3.	297	307	IPR005836	GO:0005978\|GO:0008878
	Car05g03390	518	Gene3D	Hexapeptide repeat proteins	384	518	-	-
	Car05g03390	518	PANTHER	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED	1	518	IPR011831	GO:0005978\|GO:0008878
	Car05g03390	518	Pfam	Nucleotidyl transferase	88	364	IPR005835	GO:0009058\|GO:0016779
	Car05g03390	518	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	84	479	IPR029044	-
	Car05g03390	518	CDD	ADP_Glucose_PP	89	349	-	-
	Car05g03390	518	TIGRFAM	glgC: glucose-1-phosphate adenylyltransferase	86	482	IPR011831	GO:0005978\|GO:0008878
	Car05g03390	518	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	75	383	IPR029044	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car05g03390	Car-Chr5	78469887	78474278	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car05g03390	K00975		-	gmx:100814910	895.575

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car05g03390	05	78469887	78474278	Car05g03390	05	78469887	78474278	ECH