Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03343 ATGAATACATGGATGTCAAAAACATTATCTTATCTTATAGAGATATTCTTACAACATATTCACCACTCATTCAGCAACCATAATTTTCTTTTTCACAACCAACTTGAGAAAAATCTACAAAGAAAAATATTAACCACTCATTCATCAACCATAATTTTCATTTTGCATATAAACACTCACAAAAGAGTTGTAATTCAGCTTGGTTGCATCTTAGGCATGGCCACTACTCATGCAGCTTTAGCTTCTACAAGAATTCCCACAAACACAAGGTTTCCATCTAAGGCATCTCACAATTTCCCAACCCAATGTGCCTCAAAGAGACTTGAGGTGGCTGAATTCTGTGGACTAAAATCAACATCATGCATTACCTATGCCAATAATGCTAGAGACTCTTCCTTTTCTGATGTTGTAGCTGCACAACTCACTTCCAAGGCTGCCGTTGGATCAATTCCTGTGAGGGGAGAGACTGTGGCTAAGTTGAAGGTAGCAATCAATGGTTTCGGACGCATTGGTAGAAATTTCCTCAGATGCTGGCACGAACGAAAGGACTCGCCCCTTGAAGTAATTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACTTGTTGAAATATGATTCGATGCTCGGAACTTTTAAAGCAGATGTGAAAATACTAAATAATGAGACCATTACAGTTGATGGTAAACCCATCAAGGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCTTGGGCTGAGCTTGGAATTGACATTGTTATTGAGGGAACAGGAGTGTTTGTGGATGGCCCTGGTGCTGGAAAACACATCCAAGCAGGTGCTAAGAAAGTTATCATCACTGCACCTGCAAAGGGTGCTGATATTCCAACTTATGTTGTTGGAGTAAATGAACAAGACTATGGTCATGATGTAGCTGACATCATAAGCAATGCTTCTTGCACCACAAACTGTCTTGCTCCCTTTGTGAAAATCCTGGATGAAGAGTTTGGAATTGTGAAGGGAACCATGACAACCACGCATTCCTACACAGGAGACCAGAGGCTTCTGGATGCTTCACATAGGGACTTGAGAAGAGCCAGGGCTGCAGCACTGAACATTGTCCCCACCAGCACAGGAGCAGCCAAGGCCGTGTCTTTAGTGCTGCCGCAGCTCAAGGGAAAGCTCAACGGAATTGCCCTCCGTGTGCCGACACCCAATGTTTCAGTTGTTGACCTTGTGATCAATGTTGCGAAGAAGGGTATTTCAGCTGAAGATGTCAATGCAGCATTTAGAAAGGCAGCTGAGGGGCCACTGAAAGGTGTGTTGGATGTGTGTGATCTTCCGCTAGTGTCTGTTGACTTCCGCTGCACTGATGTTTCTTCAACTATTGACTCTTCCTTGACTATGGTCATGGGAGATGATATGGTGAAGGTGGTTGCTTGGTATGACAATGAATGGGGTTACAGCCAAAGAGTGGTGGATTTAGCACATCTAGTAGCAAACAAATGGCCAGGCACCCCTCAAAAAGGTAGTGGAGACCCATTAGAGGATTTCTGTGAGACAAACCCGGCCGATGATGAATGTAAAGTTTATGAATAG 1578 0.4347 MNTWMSKTLSYLIEIFLQHIHHSFSNHNFLFHNQLEKNLQRKILTTHSSTIIFILHINTHKRVVIQLGCILGMATTHAALASTRIPTNTRFPSKASHNFPTQCASKRLEVAEFCGLKSTSCITYANNARDSSFSDVVAAQLTSKAAVGSIPVRGETVAKLKVAINGFGRIGRNFLRCWHERKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKADVKILNNETITVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEQDYGHDVADIISNASCTTNCLAPFVKILDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVINVAKKGISAEDVNAAFRKAAEGPLKGVLDVCDLPLVSVDFRCTDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKWPGTPQKGSGDPLEDFCETNPADDECKVYE 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03343 525 Gene3D Dihydrodipicolinate Reductase; domain 2 312 477 - -
Car05g03343 525 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC 75 525 - -
Car05g03343 525 SMART gp_dh_n_7 160 313 IPR020828 GO:0051287
Car05g03343 525 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 161 262 IPR020828 GO:0051287
Car05g03343 525 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 311 318 IPR020830 GO:0016620
Car05g03343 525 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 269 282 IPR020831 GO:0016620
Car05g03343 525 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 307 325 IPR020831 GO:0016620
Car05g03343 525 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 334 350 IPR020831 GO:0016620
Car05g03343 525 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 390 407 IPR020831 GO:0016620
Car05g03343 525 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 431 446 IPR020831 GO:0016620
Car05g03343 525 Pfam CP12 domain 502 525 - -
Car05g03343 525 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 75 525 IPR020831 GO:0016620
Car05g03343 525 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 318 475 IPR020829 GO:0016620
Car05g03343 525 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 159 329 IPR036291 -
Car05g03343 525 MobiDBLite consensus disorder prediction 499 525 - -
Car05g03343 525 Gene3D - 161 489 - -
Car05g03343 525 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 313 476 - -
Car05g03343 525 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 161 487 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03343 Car-Chr5 78130075 78134017 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03343 K05298 - gmx:732571 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03343 05 78130075 78134017 Car05g03343 05 78130075 78134017 ECH