Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03340 ATGTTTTCTGAAAGATTGGGGGCAAACGAAACTCGTTGTCAACAAGATTTCCACGGTTTGAGTGTGTCGAAGCGTCTTGTGAGGAGTGTCAGCCAGAAGTTGAGGAAGAAGAATAACAGAAGTTCAgaggaagatgatgatgatgatgttaatgGAGTTTCTTTGAAATGCTTAACTTTGTATGGTAGGGGTGGGGGATGCAAGGTAGGTGCTTACATTAGTGATGAATTTGGGGATTCCAGCAATAGAAGGAGATCTAGTTCCGGTGAAGAAGGCAAAGGATATAAACCGGTTTGTGGCCCGCAAGATAGTGCTGTTGTAGACTGCTTCTCGTATGGTGTGAGGGATAGGTTTTGGAGGAGACACCATAGAAAGAATTCTGAACTTGATGAATTGATAATAACAAATAATAAAATGCATATATTTCTTCCAGATGATATTCTTGAAATGTGTTTGGTTAGGCTTCCGTTGACCAGTTTGATGAATGCACGTCTTGTTTGCAAAAAATGGAGGTCCTTGACCACCACACCTAGATTCCTCCAAATGAGAAGGGAGGGTTTGTATCAAAATCCATGGTTGTTTCTGTTTGGTGCTGTTAAAGACGGCTTTTGCTCTGGTGAGATACACGCATTGGATGTGTCTCAAAATCAATGGCATAGGATCGATTCTAGTTTTCTTAGAGGCAGGTTTTTGTTCTCTGTTGCTGGTGTACAAGATGATATCTTCATTGTTGGAGGATGTTCTAGCTTGACTAACTTTGGGAAAGTGGATAGGAGCTCATTCAAGACGCACAGAGGAGTGCTTTCATTTAGCCCCTTGACAAAATCTTGGCGCAAAATACCATCTATGAAATATGGTAGATCACTTCCTATATTGGGAGTTTTTGAAGTCAGTTTGGATTTTCCAAGTTGTCAAAGTCATCAAAGTCGGCAGGACAGACGTTTTCCGAGATCAAGAATTGGTGGGGTTTCAGACGTCTATGAGGATCCTCATAAGCTTTCAATGAGACGTCATTGCAGATCTACCTTTAATGAGACTGAAGCTTCGTCTTTGCCTAGTAGAAAGGCACACAAGTTCCTGAGACAAAAAAGTGATCTTTCAAGCTCAAAGAGTAGTGGTAGAAGATTTTTGTTGATAGCTGTAGGGGGTCTGGGATCTTGGGATGACCCTTTGGACTCTGGAGAAATATATGATTCTGTATCCAATAAATGGACTGAAATCCCAAGATTGCCTTTTGATTTTGGGGTTGCTTGTTCTGGAGTTGTATGTGGCAAAATGTTTTATGTTTATTCTGAAACGGACAAGCTTGCAGCATATGATGTAGAACGAGGTTTCTGGATTACAATTCAAGCCACTCCGATCCCACCTCGTGTACATGAATACTACCCCAAACTTGTATCTTCAAATGGCCGTCTGTTTATGCTCTCTGTGTCTTGGTGCGAAGGTGATGGTCAAATTGGGAGGCGAAACAAGGCTGTTAGAAAATTATGGGAGTTAGATCTCATGTATCTTACATGGACTGAAGTCTCAGTGCATCCTGATGCCCCAATGGACTGGAATGCTGTATTTGTGGCTGACAAAAACATGATTTTTGGAGTAGAGATGTTCAAAATATTTGGTCAGGTGTTGGATTTTTTCACTGTATGTGATGTGTCTGATATGGCAAACTGGAACCATATTTCAAGGAACCATGTAACTCATGAGCTGGACGGTTCATCGTGTGCAACCAAATCGGTGGCAGTGCTGCACCTTTGA 1755 0.4103 MFSERLGANETRCQQDFHGLSVSKRLVRSVSQKLRKKNNRSSEEDDDDDVNGVSLKCLTLYGRGGGCKVGAYISDEFGDSSNRRRSSSGEEGKGYKPVCGPQDSAVVDCFSYGVRDRFWRRHHRKNSELDELIITNNKMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRSLTTTPRFLQMRREGLYQNPWLFLFGAVKDGFCSGEIHALDVSQNQWHRIDSSFLRGRFLFSVAGVQDDIFIVGGCSSLTNFGKVDRSSFKTHRGVLSFSPLTKSWRKIPSMKYGRSLPILGVFEVSLDFPSCQSHQSRQDRRFPRSRIGGVSDVYEDPHKLSMRRHCRSTFNETEASSLPSRKAHKFLRQKSDLSSSKSSGRRFLLIAVGGLGSWDDPLDSGEIYDSVSNKWTEIPRLPFDFGVACSGVVCGKMFYVYSETDKLAAYDVERGFWITIQATPIPPRVHEYYPKLVSSNGRLFMLSVSWCEGDGQIGRRNKAVRKLWELDLMYLTWTEVSVHPDAPMDWNAVFVADKNMIFGVEMFKIFGQVLDFFTVCDVSDMANWNHISRNHVTHELDGSSCATKSVAVLHL 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03340 584 PANTHER OS09G0555300 PROTEIN 1 584 - -
Car05g03340 584 Pfam F-box domain 143 179 IPR001810 GO:0005515
Car05g03340 584 Gene3D - 341 569 IPR015915 GO:0005515
Car05g03340 584 SUPERFAMILY F-box domain 143 205 IPR036047 GO:0005515
Car05g03340 584 Pfam Kelch motif 229 283 IPR006652 GO:0005515
Car05g03340 584 Pfam Kelch motif 378 411 IPR006652 GO:0005515
Car05g03340 584 PANTHER OS09G0555300 PROTEIN 1 584 - -
Car05g03340 584 SMART kelc_smart 240 297 IPR006652 GO:0005515
Car05g03340 584 SMART kelc_smart 377 424 IPR006652 GO:0005515
Car05g03340 584 ProSiteProfiles F-box domain profile. 137 183 IPR001810 GO:0005515
Car05g03340 584 SUPERFAMILY Kelch motif 190 295 IPR015915 GO:0005515
Car05g03340 584 SMART fbox_2 143 183 IPR001810 GO:0005515
Car05g03340 584 Gene3D - 154 296 IPR015915 GO:0005515
Car05g03340 584 SUPERFAMILY Kelch motif 378 532 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03340 Car-Chr5 78110522 78113448 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03340 - - ccaj:109802378 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03340 05 78110522 78113448 Car05g03340 05 78110522 78113448 ECH