Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03325 ATGGACCTTCGTTTAGGGCTTCTCATATTCCTCTCTCTATTATTACAGGTTTGCTTAATTTTATCTTTAGCAGAAGCAGAAAATTTGTCCTCAAGGATTCTTTTGGCATCTAATGACAGACCAATAGGGGAAAGGCATTCTGAAGATTACTGTGCAATGTACGACATTTGTGGAAAGCGCAGTGATGGTAAAGTAGTTAACTGTCCATATGGTTCTCCGGCTGTGAAGCCAGATGATTTGCTTTCATCGAAGATCCAAAGTTTGTGTCCAACAATTACTGGGAATGTTTGCTGTACAGAAGCTCAGTTTGACACACTAAGGACACAAGTGCAACAGGCAATTCCTTTTCTTGTAGGTTGTCCAGCATGCTTACGAAACTTTCTGAATCTATTCTGCGAGCTTACGTGCTCCCCAAGTCAGAGCTTATTTATCAATGTGACTTCAGTGGACAAGGTTGGAGCTAATTTGACAGTGGGTGGGATCGATTATTTTGTAAGTGACGCTTTTGGTGAAGGGTTATATCAGTCCTGCAAAGATGTAAAGTTTGGTACCATGAATTCTCGAGCTATGCAATTTATCGGCGGTGGTGCTCAAAATGTTAAAGAGTGGTTTGCTTTTATTGGTAAAAAAGCAGCCATTAATGGTCTTGGTTCACCATATGCAATTACATTCCAGCCAAATGCAATCAGATCATCTGGGATGAAACCTATGAATGTTTCAGCTTATTCGTGTGGTGATATTTCTCTTGGCTGTTCTTGTGGTGACTGTCCTTCATCTTCGGTATGCTCTAATTCATCTTCAACTACCACCCACAAGAGGGATTCATGTTCCTTGAAAGTTGGGACTTTAATGGTGAAATGTGTTGACTTGGCTTTAGCAGTCTTATACATCATACTGATATGTGTGTTCTTGGGTTGGGGATTGTATCATCGGATAAGGGAAAGAAAGCCGACATATAGAACAAAATCAATGTCTAATGTCGTTAATGGTGGTGTGCAGTATTCTCATAATCAGGAGAAAGACGAGAACCTCCCAATGCATCAGATTATTGAAGATGCTTCAGAAAATAGAAACGAAGTACGACTCTCAGCTGTGCAAGGATACATGTCAAATTTTTACAGGAAATATGGATCATATGTAGCTAGAAACCCAAAATTGGTCTTGGCTTCATCTTTGGCTATAGTTATTGTACTCTGTCTAGGTCTAATCAGATTGAAGGTTGAGACGCGGCCTGAGAAGCTCTGGGTGGGACCTGGGAGTAAAGCAGCAGAAGAGAAGCAGTTTTTTGACAGCCATCTTGCTCCGTTTTACAGAATCGAACAGCTCATACTGGCAACAGTTCCAGATCATGTGAATAGTACATCACCAAGAATTGTGTCAGAGGACAACATTAGGTTTCTGTTTGAAATACAAAAGAAGGTTGATGCAATTCGTGCTAATTATTCTGGCTTGATGGTATCTCTCCAAGACATATGTTTGAAGCCACTAGACACAGATTGTGCTACTCAAAGTGTCCTGCAGTACTTCAAAATGGACCCCGAAAATTTCGACAATTATGGTGGAGTTGAGCATCTCAATTATTGTTTTGAGCATTATTCCTCAGCAGATCAATGTATGAGTGCATTTAAAGGTCCTCTTGATCCAAGCACTGTATTAGGAGGTTTTTCCGGGAATGACTATTCTGGGGCTTCTGCGTTTATTGTAACTTACCCAGTAAATAATGCTATTGATGAAGAGGGCAATGAAACTGCAAAGGCAGTTGCATGGGAGAAGACCTTTATTCAGTTAGTGAAGGATGAGTTGTTACCAATGGTACAATCAAGAAATTTGACGCTGGCTTTTTCATCTGAAAGCTCTATAGAGGAAGAGTTGAAAAGAGAAAGTACTGCAGATGTTATTACTATATTGGTCAGCTATCTTGTGATGTTCGCATATATATCTCTTACTTTAGGGGATACACCCCATCCTTCTTCTTTCTATCTTTCCTCTAAGGTATTGCTTGGTCTTTCAGGAGTAATTCTTGTCATGTTGTCTGTCCTCGGATCTGTTGGAATATTTAGTGCACTCGGTGTAAAATCTACTTTGATCATCATGGAAGTTATTCCATTTCTTGTTTTAGCTGTTGGGGTTGACAATATGTGCATACTAGTTCATGCTGTGAAAAGGCAACAGCTGGAGTTGCCTTTAGAAAGACGAATAAGCAATGCACTTGTGGAAGTAGGACCATCAATAACATTGGCTAGTTTATCAGAGGTTTTAGCATTTGCAGCTGGAAGCTTTATTTCCATGCCTGCATGTCGTGTCTTCTCCATGTTTGCAGCATTGGCTGTTCTTTTGGACTTTCTCCTGCAAGTTACTGCATTTGTAGCTCTGATAGCTCTTGACTCTTTGAGAGCTGAGGATAAGAGGGTTGATTGTTTTCCATGCATAAAAGTGGATTCTTTGCATGCAGACCCTCATAAAGGCATTGGACAAAGGAAACCTGGTTTATTGGCTCGATATATGAAGGAGGTTCATGCTCCCATTCTAAGTATTTGGGGAGTAAAAATATTTGTCATTGCAATTTTTGTGGCATTTGCATTGGCTAGCATCGCTTTGAGTACTAGAATTGAACCTGGATTAGAGCAGGAAATTGTTCTTCCCCGAGACTCATATCTTCAGGGGTATTTCAAAAATGTTTCCGACTATCTCAGAATTGGGCCACCTCTGTATTTTGTTGTGAAGAACTATAACTATAGCTCAGAATCAACACATACAAATCAGCTTTGCTCCATTAGCCAATGCAATTCAGACTCTCTTTTAAATGAGATCGCTAAAGCTGCCCTAGTACCGGACACAAGTTATATTGCAAAGCCAGCTGCTTCTTGGCTTGATGATTTTCTTGTGTGGGTATCTCCAGAAGCATTTGGGTGCTGCAGGAAGTTCACAAATGGGAGTTATTGCCCTCCTGATGATCAGCCTCCTTGCTGTGCTCCTGGAGAAGGCTCTTGTGTTTCAGTTGGAGTATGTAACGATTGTACAACGTGTTTCCGTCATTCAGATCTCCACAATGATCGTCCCTCCACAACACAATTTAGGGAGAAATTGCCGTGGTTTCTTAGTGCTCTGCCATCTGCGGACTGTGCAAAAGGGGGTCATGGGGCATACACCAGCAGTGTTGAACTGAAAGGCTATGACAGTGGCATTATTCAAGCATCATCATTCCGTACATATCATACCCCACTCAACAAGCAGGCTGACTTTGTTAATTCCATGAGGGCTGCTCGAGAGTTCAGTTCAAGGGTTTCTGATTCTTTGAAGATTGAGATCTTCCCATATTCAGTGTTTTATATGTTTTTTGAGCAATACCTTAATATATGGAAGACTGCACTGGTCAACCTTGCAATAGCTATTGGTGCAGTATTTATTGTATGCTTAGTTATCACATGCAGTTTATGGAGTTCAGCAATCATTTTGTTGGTGTTGACCATGATTGTTGTTGATCTTATGGGTGTGATGGCGATTCTGAATATCCAGCTGAATGCCATCTCAGTGGTCAACCTCGTTATGTCAGTGGGCATCGCTGTCGAGTTTTGTGTGCATATGACTCATTCTTTCACTGTAACAAGTGGTAATAAAGATCAGCGTGTTAAGGAGGCTCTAGGTACAATGGGTGCTTCAGTCTTCAGTGGCATCACACTAACAAAGTTGGTTGGAGTTATCGTTCTCTGCTTCTCAAGAACAGAAGTCTTTGTGGTTTATTACTTTCAGATGTACTTGTCGTTAGTACTTCTTGGTTTTTTGCACGGACTTGTTTTCTTGCCGGTGGTATTAAGCATCTTTGGTCCACCTTCAAGATGTAAAATCTCTGACCAAGGAGGAGATCGTTCATCAACTTCTTCTTAG 3885 0.4093 MDLRLGLLIFLSLLLQVCLILSLAEAENLSSRILLASNDRPIGERHSEDYCAMYDICGKRSDGKVVNCPYGSPAVKPDDLLSSKIQSLCPTITGNVCCTEAQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPSQSLFINVTSVDKVGANLTVGGIDYFVSDAFGEGLYQSCKDVKFGTMNSRAMQFIGGGAQNVKEWFAFIGKKAAINGLGSPYAITFQPNAIRSSGMKPMNVSAYSCGDISLGCSCGDCPSSSVCSNSSSTTTHKRDSCSLKVGTLMVKCVDLALAVLYIILICVFLGWGLYHRIRERKPTYRTKSMSNVVNGGVQYSHNQEKDENLPMHQIIEDASENRNEVRLSAVQGYMSNFYRKYGSYVARNPKLVLASSLAIVIVLCLGLIRLKVETRPEKLWVGPGSKAAEEKQFFDSHLAPFYRIEQLILATVPDHVNSTSPRIVSEDNIRFLFEIQKKVDAIRANYSGLMVSLQDICLKPLDTDCATQSVLQYFKMDPENFDNYGGVEHLNYCFEHYSSADQCMSAFKGPLDPSTVLGGFSGNDYSGASAFIVTYPVNNAIDEEGNETAKAVAWEKTFIQLVKDELLPMVQSRNLTLAFSSESSIEEELKRESTADVITILVSYLVMFAYISLTLGDTPHPSSFYLSSKVLLGLSGVILVMLSVLGSVGIFSALGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLERRISNALVEVGPSITLASLSEVLAFAAGSFISMPACRVFSMFAALAVLLDFLLQVTAFVALIALDSLRAEDKRVDCFPCIKVDSLHADPHKGIGQRKPGLLARYMKEVHAPILSIWGVKIFVIAIFVAFALASIALSTRIEPGLEQEIVLPRDSYLQGYFKNVSDYLRIGPPLYFVVKNYNYSSESTHTNQLCSISQCNSDSLLNEIAKAALVPDTSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNGSYCPPDDQPPCCAPGEGSCVSVGVCNDCTTCFRHSDLHNDRPSTTQFREKLPWFLSALPSADCAKGGHGAYTSSVELKGYDSGIIQASSFRTYHTPLNKQADFVNSMRAAREFSSRVSDSLKIEIFPYSVFYMFFEQYLNIWKTALVNLAIAIGAVFIVCLVITCSLWSSAIILLVLTMIVVDLMGVMAILNIQLNAISVVNLVMSVGIAVEFCVHMTHSFTVTSGNKDQRVKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLSLVLLGFLHGLVFLPVVLSIFGPPSRCKISDQGGDRSSTSS 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03325 1294 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1084 1275 - -
Car05g03325 1294 Pfam Patched family 1059 1274 IPR003392 GO:0016021
Car05g03325 1294 Pfam Patched family 450 910 IPR003392 GO:0016021
Car05g03325 1294 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 607 794 - -
Car05g03325 1294 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1082 1280 - -
Car05g03325 1294 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 10 1293 - -
Car05g03325 1294 Gene3D Multidrug efflux transporter AcrB transmembrane domain 592 803 - -
Car05g03325 1294 ProSiteProfiles Sterol-sensing domain (SSD) profile. 631 794 IPR000731 -
Car05g03325 1294 Pfam Niemann-Pick C1 N terminus 49 281 IPR032190 -
Car05g03325 1294 PANTHER PATCHED FAMILY PROTEIN 10 1293 - -
Car05g03325 1294 TIGRFAM 2A060601: Niemann-Pick C type protein family 51 1275 IPR004765 GO:0005319|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03325 Car-Chr5 77960612 77976974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03325 45 1294 Miscellaneous Gene Families AT1G42470 73.280 0.0 1863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03325 K12385 - gmx:100813262 2235.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03325 05 77960612 77976974 Car05g03325 05 77960612 77976974 ECH