Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03300 ATGCCTACTCTAGTAGTCGAAGAATCCCATACCAACTTGAAGTCCATTTTTGGCGCTTCAGGAGTGAAAGGCAAAAAAGTCACAACTTTGCCCCCCGAAATTACTATCTCTCATTTCATTCAATCCATTATTAAAAACAAATCATCCCAAATTGACTCACCATTCAGTGTCCTTGATTTAAGGGTCCTAATGGACCTCATGACCAAATGGACCACTAAACTTCCAACCGTTAAACCTTATTACGCCGTTAAGTGTAACCCAAATCTTTCACTCATTGGTACACTAGCTTCACTCGGCTCCAATTTCGACTGCGCTAGCCGAGCCGAAATTGAAGCCGTTTTATCACTCGGTGTTTCACCCGATAGAATCATTTACGCTAACCCGTGTAAATCCGAGTCACACATTAAATACGCCGCAAATGTCGGTGTAAACATAACAACCTACGATTCCGTTGGAGAAATTGATAAAATAAAAAAATGGCACCCAAAATGTGAATTGGTTCTACGTATCAAGCCACAAGAAGATAGCGGCGCAAGGTCGTGTTTGGGACTCAAATACGGAGCGCTGGTCGAAGAAGTTCCTGAGCTTCTTAAAGCTGCTGACGTGGCAGGGCTTAAAGTAATTGGCGTGTCGTTCCACATAGGTAGTGGAGGAGGCAACGCGATGGCTTACCATGGAGCCATCGCGTTGGCTAAAAATGTTTTTGAAACGGCTTCACTACTCGGAATGCCTAAAATGAAAATCCTAAACATAGGTGGAGGATTCACGTCTGGAACAAAATTTGATGTAGCTGCTCTTAATGTGAACGATGCGATTAAAACATATTTTGGTAACGACGAGGATCTTGTTGTTATTGGTGAACCCGGTCGTTACTTTGCGGAAACGTCATTTACATTAGCAACAAAAATTATTGGAAAGCGCGTTAGAGGTGAATTGAAGGAGTATTGGATTGATGATGGAATTTATGGAACTCTGAATAACATTATGTTTGATTTTGCTATTGTGAGTTGCACGCCAATGAGGTTTAGTTCAAAACATGAGAAAAACGTTAGAGACACAAAAAGTTATGCTTCAACTGTTTTTGGGCCCACTTGTGATTCAGTTGATACGGTTCTTAAAGAGTACGAGCTACCTGAACTTGAGGTAAACGATTGGCTTGTGTTTCAGAATATGGGTGCTTATACACTTTCTTCTGGGACCAATTTCAATGGGTTTAGTTCCTCAGCTAAGAATATCTACCTTGCATGTTCAACTCCTGTTCCACGAGAAGAAACCAACTTCTGA 1284 0.4143 MPTLVVEESHTNLKSIFGASGVKGKKVTTLPPEITISHFIQSIIKNKSSQIDSPFSVLDLRVLMDLMTKWTTKLPTVKPYYAVKCNPNLSLIGTLASLGSNFDCASRAEIEAVLSLGVSPDRIIYANPCKSESHIKYAANVGVNITTYDSVGEIDKIKKWHPKCELVLRIKPQEDSGARSCLGLKYGALVEEVPELLKAADVAGLKVIGVSFHIGSGGGNAMAYHGAIALAKNVFETASLLGMPKMKILNIGGGFTSGTKFDVAALNVNDAIKTYFGNDEDLVVIGEPGRYFAETSFTLATKIIGKRVRGELKEYWIDDGIYGTLNNIMFDFAIVSCTPMRFSSKHEKNVRDTKSYASTVFGPTCDSVDTVLKEYELPELEVNDWLVFQNMGAYTLSSGTNFNGFSSSAKNIYLACSTPVPREETNF 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03300 427 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 81 99 IPR022653 -
Car05g03300 427 PANTHER ORNITHINE DECARBOXYLASE-LIKE 26 420 - -
Car05g03300 427 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 66 293 IPR022644 GO:0003824
Car05g03300 427 SUPERFAMILY Alanine racemase C-terminal domain-like 274 407 IPR009006 GO:0003824
Car05g03300 427 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 294 392 IPR022643 GO:0003824
Car05g03300 427 Gene3D Alanine racemase 63 292 IPR029066 -
Car05g03300 427 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 26 420 IPR002433 GO:0006596
Car05g03300 427 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 239 256 IPR022657 -
Car05g03300 427 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 50 414 IPR009006 GO:0003824
Car05g03300 427 CDD PLPDE_III_ODC 52 409 - -
Car05g03300 427 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 81 99 IPR000183 GO:0003824
Car05g03300 427 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 101 113 IPR000183 GO:0003824
Car05g03300 427 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 204 217 IPR000183 GO:0003824
Car05g03300 427 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 284 303 IPR000183 GO:0003824
Car05g03300 427 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 392 405 IPR000183 GO:0003824
Car05g03300 427 PRINTS Ornithine decarboxylase signature 53 77 IPR002433 GO:0006596
Car05g03300 427 PRINTS Ornithine decarboxylase signature 79 106 IPR002433 GO:0006596
Car05g03300 427 PRINTS Ornithine decarboxylase signature 123 147 IPR002433 GO:0006596
Car05g03300 427 PRINTS Ornithine decarboxylase signature 153 175 IPR002433 GO:0006596
Car05g03300 427 PRINTS Ornithine decarboxylase signature 319 332 IPR002433 GO:0006596
Car05g03300 427 PRINTS Ornithine decarboxylase signature 359 369 IPR002433 GO:0006596
Car05g03300 427 PRINTS Ornithine decarboxylase signature 379 392 IPR002433 GO:0006596
Car05g03300 427 SUPERFAMILY PLP-binding barrel 52 294 IPR029066 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03300 K01581 - gmx:548088 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03300 05 77703068 77704674 Car05g03300 05 77703068 77704674 ECH