Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03293 ATGCTTGAGTCTTGGCTCTTAACCGGAAACAAAAAACAAAGGTCTTTTACAGTTCAGGGCGCGCCGCCAATAACTAATTTCTTCTTCACTTTAAAAAGTGACGGTAGTTCCCGAACGGCAAAACCTAATGATACAAACGAAACTCCTCAAAACACCACCAATCTATCTCCCGAAGAGTCTCAAATAGTCGACAAGTTTCACACCGCAATTAAAGACCACTACAGCAAAAACCCTAACCCTAACCCTAACCCCCTTCCACCTTCACTCAATCTCTCCATACCCGATCTTTCAATCGATTTTACTAAAATCTCCACCGTTCATTCAATTTCTCCCTCCATCGCCCGCCGCGTCATCGAGAAATGCGGCGGTGTCCGCCACGGTAATCCATTTCTCCAAACCCTAGCCTTCTTCAACTATGCCACCACGCTCGAAGGATTCCCTTCTTCCCCTGAGCCCTATAATGAGATGATTGACCTGGCCGGAAAACTCAGACACTTCGAATTAGCATGGAACTTAATCGATTTGATGAAATCACGCGGCGTCAAAATTACAGTCGGCACGTTCGCTGTTCTCGTCCGGCGTTACGTGAGGGCTGGATTGGCTGCGGAGGCGGTGCACGCTTTTAATCGTATGGAAGAGTACGGTTGCACGCCTGATAAGGTCCGGACAGATCACTCGTGCTCATGA 687 0.4789 MLESWLLTGNKKQRSFTVQGAPPITNFFFTLKSDGSSRTAKPNDTNETPQNTTNLSPEESQIVDKFHTAIKDHYSKNPNPNPNPLPPSLNLSIPDLSIDFTKISTVHSISPSIARRVIEKCGGVRHGNPFLQTLAFFNYATTLEGFPSSPEPYNEMIDLAGKLRHFELAWNLIDLMKSRGVKITVGTFAVLVRRYVRAGLAAEAVHAFNRMEEYGCTPDKVRTDHSCS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03293 228 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Car05g03293 228 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 34 220 - -
Car05g03293 228 MobiDBLite consensus disorder prediction 33 59 - -
Car05g03293 228 TIGRFAM PPR: pentatricopeptide repeat domain 153 184 IPR002885 -
Car05g03293 228 TIGRFAM PPR: pentatricopeptide repeat domain 187 219 IPR002885 -
Car05g03293 228 Pfam PPR repeat 187 216 IPR002885 -
Car05g03293 228 Pfam PPR repeat 153 181 IPR002885 -
Car05g03293 228 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Car05g03293 228 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 34 220 - -
Car05g03293 228 Gene3D Tetratricopeptide repeat domain 105 224 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03293 Car-Chr5 77652217 77653542 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03293 - - gmx:100800850 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03293 05 77652217 77653542 Car05g03293 05 77652217 77653542 ECH