Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03290 ATGATATCACTTAATAACTCATGTGGATGTTGTGGTGTTTCCACAGCAACAAGAGCATTCCAATCTCAGTTTCGAACTTCACCTTCTTCACTGTTTTTCTTCTCTCCCACTAAGTTTCCACGTGGCGTTGCGAGAGCCGTTTCTGGTTTGGCCGATGATTCGAACTCGAACGGAGAGCCAAAATCGAATTACGCAGGCGTGCGGTTGGAAGAGATCGTGGACGGTGAAATCAAATCTGGGAAACTGAGACTAGACACTTGGATCTCTTCTCGCATCAATGGCATCAGTAGGGCTCGTGTTCAATCAAGTATTAAAGCCGGACTCGTTCATGTCAATGGCCGTCTCGTTGATAAGGTTTCTTTCAATGTCAGAGCTGGGGATGAAATCAAGTGCACAATTGCAGAGTTGCAAAAGTTGAGAGCTGTGCCGGAAAACATACCTTTGGATATAGTTTATGAAGATGAGCATTTGCTAGTCATAAATAAACCTGCACACATGGTTGTGCATCCAGCACCTGGCAATACATCTGGGACACTCGTCAATGGCATTCTTCACCATTGCAACCTGCCAAATGTTGAATTTTCTAAAGACGAAGCTCTTTCAGATACAGAAGATTCGGATGATGAACTTAATGGCTTCACGTCCCAGGCACCTTCTTGTGAAGGGTTAGATTCTAGATTGTCTATAGCATCAATTCGCCCAGGAATTGTACACAGATTAGACAAAGGCACGAGTGGGTTACTAGTTGTTGCAAAGGATGAACATTCTCATATGAAATTGTCTGAACAATTCAAGCTGCGCACTATCAAGAGGGTCTATATTAGTCTCACTGCCGGGGTACCTACTCCAGTTGCTGGGCGTGTTGAGGTTCCGGTTGGTCGTGATCCTAATAACCGGCTTCGTATGACTGCTGTAGCTGGACCACTTACCTCTATGAAGGCCCGTCATGCTGCTAGTAGGTATAAAGTAATTGAGATACTTGCTGGGGGTAGCTGTGCATTGGTTGAGTGGAAGTTGGAAACCGGACGCACTCATCAGATCCGTGCACATGCCAGGTATTTGGGTGTACCTCTGCTTGGTGATGAGGTATATGGAGGGACGAAAAACATGGTCTTGTCACTGCTAAGGCCGCGAACAACTCCGAGTTTGCATGGGGAAATGACTAAAATGGTTTCTGAGCTAGATAGGCCTTGCCTTCATGCTATGACTCTCGGGTTTCAGCATCCTCATACAGGGGAGCAGGTGCACTTTTCATGCGAACCCCCTGTAGATTTTAATGAGATTTTGAGCCAGCTTCGTAGAATTGGCAGGCAGTGA 1317 0.4594 MISLNNSCGCCGVSTATRAFQSQFRTSPSSLFFFSPTKFPRGVARAVSGLADDSNSNGEPKSNYAGVRLEEIVDGEIKSGKLRLDTWISSRINGISRARVQSSIKAGLVHVNGRLVDKVSFNVRAGDEIKCTIAELQKLRAVPENIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKDEALSDTEDSDDELNGFTSQAPSCEGLDSRLSIASIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKLRTIKRVYISLTAGVPTPVAGRVEVPVGRDPNNRLRMTAVAGPLTSMKARHAASRYKVIEILAGGSCALVEWKLETGRTHQIRAHARYLGVPLLGDEVYGGTKNMVLSLLRPRTTPSLHGEMTKMVSELDRPCLHAMTLGFQHPHTGEQVHFSCEPPVDFNEILSQLRRIGRQ 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03290 438 SUPERFAMILY Alpha-L RNA-binding motif 81 169 - -
Car05g03290 438 ProSiteProfiles S4 RNA-binding domain profile. 82 155 - -
Car05g03290 438 Pfam RNA pseudouridylate synthase 156 351 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Car05g03290 438 SMART s4_6 82 147 IPR002942 GO:0003723
Car05g03290 438 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 81 434 - -
Car05g03290 438 Pfam S4 domain 83 129 IPR002942 GO:0003723
Car05g03290 438 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 81 434 - -
Car05g03290 438 Gene3D Pseudouridine synthase 139 421 - -
Car05g03290 438 ProSitePatterns Rlu family of pseudouridine synthase signature. 237 251 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Car05g03290 438 CDD PseudoU_synth_RluA_like 157 406 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Car05g03290 438 Gene3D - 67 138 IPR036986 GO:0003723
Car05g03290 438 SUPERFAMILY Pseudouridine synthase 142 433 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Car05g03290 438 CDD S4 83 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03290 Car-Chr5 77615355 77620170 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03290 K06180 - gmx:100810383 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03290 05 77615355 77620170 Car05g03290 05 77615355 77620170 ECH