Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03280 ATGCATCAAGGAGATTACACCTCCGCTCCATATTATCAATTCCCCCACATGCAAAACCCAATCCCCAATCCTACCCCTCCTCCATCCGATCCACTTCCGAACCACTACGCTTCCGCACCTCCCTTCACTCCCAACAATAATTACGATTATCCTTCTAACTATTCTCCATACCCTCCTCataataataataataataataataataataatCCTGATCCTGTCCCCTCTTCCTACCCTCCATCCAACCCTAATTTCAATCCTCCCTTCGAATCTAATCCTCCTTATCAACCACCGTCACAACCCTATTATCCACCCTATGATCAACATCAAACGCCTCCAAATTTCGCCCCTCCTCACTCCTCAATTCCACCAAACCCTAACCCCAATCCCAATTCATCGTTATATAATTCGGCTCCGTATATTCATGCCGCCTCTTCTGTTCCTCCGATTCCAACCTACGAAAACCCATACGAGAATCCGGTGAAATCCGATTACGGTGGCGGTGCTTATTTCGATGATAGGTATGGAAGTTTTAATCGTAGCCGTTCTGATTTGGGATCTGAATTATACGGTAAGCGGCACGATGGTGGTTTGTCTAGGTATGAAggagggggtggtggtggtggtggtgatgAAGGTTACGGAGATGGGGTGTATGCTTATGAAGGTGGAAAAGTGGAACCGTATGGGGCACGTGGTACGGCTCCGAAATCTTCTACTTGGTCTTCGTCGCTATCGTTCGATGATTTTGGGAGACCGATTACTTTTTCGTCTCAGAAAGAGTCGTCAGTGCCAAGTAAGATTGTGAAAGCTGTGCCAAAGGCTGATGCGCAAGATGATGTGAAAAGTGGGGTGCAAAAGTTTCGAGTCAAGCTGTTGGCAGAGAGTGGTGGTCAGAGCACAATGGATGTTCTTTCCCAGGTTGGTTTGGATGGAATTCGCATGCTAGATCTAAATACCAGTCGAACATTGAGAATATATCCTCTTGAGAACATAACTAGATGTGATAGATTCGATTCATCTACCTTCGCATTTTGGTCGAAGAGCCCTGTTGACATTGAACCAAGACGTATCAGATTGCAGTCTAATAGTTACACTACAAACACACTTTTGGATACCGTGACTGCTGCAATCATACAGTTCAAGGAAATGGGTGGAAGCAGGAGGCCTGTTGAATCATTAAAAACAAATGAACAGCCTACCGAAAGAAAGAAAGGCCTTGGTGATTGGATGAATATGATTAAACCTGCCAATGAAGAGAAAGATCATTGGGTCCCAGATGAAGCGGTCTCAAAATGTACAGCATGTGGCACTGATTTTGGGGCTTTTATACGCAAGCATCATTGTAGGAACTGTGGTGACATTTTCTGTGACAAATGTACACATGGTAGAATTGCTCTCACCACTGATGAGAATGCTCAGCCAGTACGAGTTTGTGACCGATGCATGGCAGAAGTGACTCAAAGGTTGTCTAGTGCTAAAGAGTCATCAAATAAACCTCTGTTGCAAAGTCACGAGGATCTTGCCCGGAAACTTCAGGAGGAGCTGGAGCGAAATCGGAAGTCATCAGGTTCCAAGTCTGAAGGATCTGGAAGACGGATGAAGGAAGTTGCATGTCCTATTTGCACTGTCCATCTGCAGGTCCAGGTACCTAGCTCGGGTTCAGAGACCATTGAGTGTGGAGTTTGCCAGCACCCATTTCTTGTGAGTTCTTATTAG 1719 0.4404 MHQGDYTSAPYYQFPHMQNPIPNPTPPPSDPLPNHYASAPPFTPNNNYDYPSNYSPYPPHNNNNNNNNNNPDPVPSSYPPSNPNFNPPFESNPPYQPPSQPYYPPYDQHQTPPNFAPPHSSIPPNPNPNPNSSLYNSAPYIHAASSVPPIPTYENPYENPVKSDYGGGAYFDDRYGSFNRSRSDLGSELYGKRHDGGLSRYEGGGGGGGGDEGYGDGVYAYEGGKVEPYGARGTAPKSSTWSSSLSFDDFGRPITFSSQKESSVPSKIVKAVPKADAQDDVKSGVQKFRVKLLAESGGQSTMDVLSQVGLDGIRMLDLNTSRTLRIYPLENITRCDRFDSSTFAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTVTAAIIQFKEMGGSRRPVESLKTNEQPTERKKGLGDWMNMIKPANEEKDHWVPDEAVSKCTACGTDFGAFIRKHHCRNCGDIFCDKCTHGRIALTTDENAQPVRVCDRCMAEVTQRLSSAKESSNKPLLQSHEDLARKLQEELERNRKSSGSKSEGSGRRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSSY 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03280 572 MobiDBLite consensus disorder prediction 1 168 - -
Car05g03280 572 SUPERFAMILY FYVE/PHD zinc finger 422 495 IPR011011 -
Car05g03280 572 MobiDBLite consensus disorder prediction 187 209 - -
Car05g03280 572 CDD PTB 289 345 - -
Car05g03280 572 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 427 487 IPR017455 -
Car05g03280 572 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 492 IPR013083 -
Car05g03280 572 Pfam FYVE zinc finger 423 487 IPR000306 GO:0046872
Car05g03280 572 MobiDBLite consensus disorder prediction 39 72 - -
Car05g03280 572 SMART fyve_4 419 488 IPR000306 GO:0046872
Car05g03280 572 MobiDBLite consensus disorder prediction 73 130 - -
Car05g03280 572 PANTHER PROTEIN FREE1 1 571 - -
Car05g03280 572 PANTHER PROTEIN FREE1 1 571 IPR045893 GO:0036258|GO:0043130
Car05g03280 572 Coils Coil 502 522 - -
Car05g03280 572 MobiDBLite consensus disorder prediction 17 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03280 Car-Chr5 77524479 77529914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03280 415 488 EF-hand Containing Proteins AT3G14270 36.250 1.52e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03280 - - gmx:100794840 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03280 05 77524479 77529914 Car05g03280 05 77524479 77529914 ECH