Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03257 ATGTCTGCATCCGAAGCTGAGAAGAAGGTCGAGGAAGAGAACCAAGTGTCCAAAGGTGGAGAACTCTTGTTCTGCGGTGCCACGTGTTGGGATATCATTGGTCGTCGTAAAGGTCCCGCCGACGGTAACTTAGTTTCTCCTTCTCGCCTCCGTCCTCTCGTTGGCATTGATATTCGTTACGTCGCCTCTGGTTGCGCTTCTTGTCACTGCGTGGCATTGGACGTTGAAGGGCGTTGCTATACATGGGGACGCAATGAGAAAGGGCAACTAGGTCATGGAGATACCATTCAGCGCGATAGGCCAACTGTGGTGTCTGAACTTTCTAAATACAACATTGTTCAAGCTGGAGCTGGGAGGAGCCATACAGTAGTTGTTACAGATGATGGAAATTCCCTAGCATTTGGTTGGAACAAACACGGTCAGCTGGGTTCCGGTTCTGCAAAAACTGAAATCGAATCATCACCTGTTCGCTGTCTTGTGTCTGAAGTTAAATATGCTACCTGTGGTGGTGACTTTACTGTGTGGTTATCTTCTGTTGAAGGAGCTTCTATAATGACTGCTGGGCTTCCACAGTTTGGGCAGCTCGGGCATGGAACCGATAATGAGTACAATTCCAAAGACAGCTCTGTTAAATTAGTTTATGAAGCACAGCCACGTCCTCGAGCAATAGCTTCCCTTGCTGGCGAAACCATTGTCAAGGTGGCATGTGGAACAAATCACACAGTGGCGGTGGATAAGAATGGCTTTGTCTACACGTGGGGTTTTGGTGGTTATGGAAGGCTAGGACATAGGGAGCAGAAGGATGAATTTTCTCCACGTCGTGTTGAAGTTTTCCAGAATAGAAATGTTTTGCCTCCTGATGCAATTATTTCAGCTGGTTCTGTGAATTCTTCTTGCACTGCAGCTGGAGGACAGTTGTACATGTGGGGCAAAATAAAGAATACCGGTGATGACTGGATGTACCCTAAGCCTCTAATGGATTTAAGTGGTTGGAATATACGCTGCATGGATTCAGGGAATATGCATCATTTTGTTGGGGCTGATTCCTCGTGCATAAGTTGGGGTCATGCTCAGAATGGAGAGCTGGGATATGGACCTAATGGACAGAAGTCTTCAGCTGTACCGAAAAAGGTGGATATACTTGAGGGTATGCATGTAATGAGTGTTGCTTGTGGTTTGGGTCATTCCATGGTTGTGGTCGACAGAGCTAATATTGCTGATAGACTTGATCAGCTTGATACACATGATGGCAAAGCTGTCGGTGAAGGCACTGATGAACCCACGAAAAAAACTCCAGTGCCTAAGAAGACTGCAAAAAAGAGTGCAAAGGGAGCTGACAGTTCAAAGAAAAGGAAAAAAGCAAAAGATCCATCTGACTCTGAAGAAGATCAAGAAGAAGCTGATGAAAGTGACAGTAGTGAGGATGATGTTAACGGTGAGGCTGAGGTTAAAAGATCACGTGGTGGAAAAAGTTCTGGCAGGGGCCGAGGTAAGGCATCCAAAACACCAGAGTCTGTGGCTAAAGGTTCCGGCCGAGGGCGTGGTCGTGCTCCAGCAAGTAAAAGCAGTTCTAAATCTTCTGAAGTGAAACCATCTGGTAAGAGAGGAAGACCCCGTAAGTCTTGA 1626 0.4662 MSASEAEKKVEEENQVSKGGELLFCGATCWDIIGRRKGPADGNLVSPSRLRPLVGIDIRYVASGCASCHCVALDVEGRCYTWGRNEKGQLGHGDTIQRDRPTVVSELSKYNIVQAGAGRSHTVVVTDDGNSLAFGWNKHGQLGSGSAKTEIESSPVRCLVSEVKYATCGGDFTVWLSSVEGASIMTAGLPQFGQLGHGTDNEYNSKDSSVKLVYEAQPRPRAIASLAGETIVKVACGTNHTVAVDKNGFVYTWGFGGYGRLGHREQKDEFSPRRVEVFQNRNVLPPDAIISAGSVNSSCTAAGGQLYMWGKIKNTGDDWMYPKPLMDLSGWNIRCMDSGNMHHFVGADSSCISWGHAQNGELGYGPNGQKSSAVPKKVDILEGMHVMSVACGLGHSMVVVDRANIADRLDQLDTHDGKAVGEGTDEPTKKTPVPKKTAKKSAKGADSSKKRKKAKDPSDSEEDQEEADESDSSEDDVNGEAEVKRSRGGKSSGRGRGKASKTPESVAKGSGRGRGRAPASKSSSKSSEVKPSGKRGRPRKS 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03257 541 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 115 125 IPR000408 -
Car05g03257 541 MobiDBLite consensus disorder prediction 414 541 - -
Car05g03257 541 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 402 IPR000408 -
Car05g03257 541 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 303 IPR000408 -
Car05g03257 541 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 77 128 IPR000408 -
Car05g03257 541 MobiDBLite consensus disorder prediction 414 460 - -
Car05g03257 541 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Car05g03257 541 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 129 179 IPR000408 -
Car05g03257 541 Gene3D - 8 158 IPR009091 -
Car05g03257 541 Gene3D - 159 443 IPR009091 -
Car05g03257 541 SUPERFAMILY RCC1/BLIP-II 17 402 IPR009091 -
Car05g03257 541 PRINTS Chromosome condensation regulator RCC1 signature 78 94 IPR000408 -
Car05g03257 541 PRINTS Chromosome condensation regulator RCC1 signature 112 125 IPR000408 -
Car05g03257 541 PRINTS Chromosome condensation regulator RCC1 signature 131 147 IPR000408 -
Car05g03257 541 PRINTS Chromosome condensation regulator RCC1 signature 234 250 IPR000408 -
Car05g03257 541 PRINTS Chromosome condensation regulator RCC1 signature 250 264 IPR000408 -
Car05g03257 541 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 247 IPR000408 -
Car05g03257 541 MobiDBLite consensus disorder prediction 461 476 - -
Car05g03257 541 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 234 244 IPR000408 -
Car05g03257 541 Pfam Regulator of chromosome condensation (RCC1) repeat 190 244 IPR000408 -
Car05g03257 541 Pfam Regulator of chromosome condensation (RCC1) repeat 247 283 IPR000408 -
Car05g03257 541 Pfam Regulator of chromosome condensation (RCC1) repeat 76 125 IPR000408 -
Car05g03257 541 Pfam Regulator of chromosome condensation (RCC1) repeat 128 174 IPR000408 -
Car05g03257 541 Pfam Regulator of chromosome condensation (RCC1) repeat 353 399 IPR000408 -
Car05g03257 541 PANTHER PROTEIN RCC2 4 527 IPR028641 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03257 Car-Chr5 77312749 77318524 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03257 - - gmx:100819842 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03257 05 77312749 77318524 Car05g03257 05 77312749 77318524 ECH