Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03255 ATGAGCAAAAGACCACCACCGGATCCTGTGGCAGTGCTTCGAGGTCATCGCGCTTCAGTCACCGATATTGCCTTTCATCCCTTTAAACCTATATTATTCTCCGGTTCTGCTGATGGTGAATTGCGGATTTGGGATACTTTTCGGCGTCAAACAGTTTCGTCAGCGTGGTTACATAGTGCCGCACATGGCATTGTTGCTCTTGCAAGTAGTTCTTCACTTGGGACCAATAAATTTGTCAGCCAGGGTAGGGATGGAACTGTGAAAGTTTGGGATTTTGATGATGCTGGCTTGTCCAGGATTCCATCACTCACAATCAAGACAAACAGTTACCACTTTTGTAAGTTTTCGCTGGCTAAGAATCATTATACAGAAGGGAAAGCTTCAAAAGAATGCCTTGAAACAGAAGAGGCTTATACTAATCAAAGTTGTTCTGAAAGTTCTGAAGGGCTATCGTATGTGGCTTTCTCGGGAGAGAACTCTTCTGAGGTTGAAGTTTGGGATCTCAAGTCAGCTGAAAGATTTGTGCGATTCCCTTCAAACATTGGTAGTAACTCTTCAACTATTAGCAGCAAAGGGATGTGCATGGCACTTCAATTGTTTGTACCATCTGAATCGCAGGGATTTTTAAATGTCATGGCTGGATATGAAGATGGTTCCATGCTATGGTGGGATGTACGGAATCCTGGAGTTCCAATAAGTTCAGTGAAATTCCATTCTGAGCCAGTTCTGAGCATCTGTGTTGACGGGTCTTGCAAAGGGGGCATCTCGGGAGCTGCAGATGAGAGGATTGTGATGTACAGCTTTGATCATTCTTTGGGTACATGTGTGGTCAATAAAGAAATTAAACTAGAGCGACCTGGCATCTCAGGCACCTCAATCCGGCCTGATGGCAAAATTGCTGCAACTGCTGGCTGGGACCACAGAGTACGGATATATAACTATCGCAAAGGAAATGCTTTAGCTGTACTAAAGTATCATCATGCCACGTGCAATGCTGTAACTTTTTCGTCTGATTGTAAGCTTATGGCCTCTGCATCGGCAGACACAACTGTGGCGCTATGGGAATTGTATCCTCCTCGAACATGA 1086 0.4457 MSKRPPPDPVAVLRGHRASVTDIAFHPFKPILFSGSADGELRIWDTFRRQTVSSAWLHSAAHGIVALASSSSLGTNKFVSQGRDGTVKVWDFDDAGLSRIPSLTIKTNSYHFCKFSLAKNHYTEGKASKECLETEEAYTNQSCSESSEGLSYVAFSGENSSEVEVWDLKSAERFVRFPSNIGSNSSTISSKGMCMALQLFVPSESQGFLNVMAGYEDGSMLWWDVRNPGVPISSVKFHSEPVLSICVDGSCKGGISGAADERIVMYSFDHSLGTCVVNKEIKLERPGISGTSIRPDGKIAATAGWDHRVRIYNYRKGNALAVLKYHHATCNAVTFSSDCKLMASASADTTVALWELYPPRT 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03255 361 SUPERFAMILY WD40 repeat-like 4 355 IPR036322 GO:0005515
Car05g03255 361 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Car05g03255 361 ProSitePatterns Trp-Asp (WD) repeats signature. 342 356 IPR019775 -
Car05g03255 361 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 361 - -
Car05g03255 361 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Car05g03255 361 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Car05g03255 361 PRINTS G protein beta WD-40 repeat signature 342 356 IPR020472 -
Car05g03255 361 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Car05g03255 361 Gene3D - 200 360 IPR015943 GO:0005515
Car05g03255 361 Pfam WD domain, G-beta repeat 292 313 IPR001680 GO:0005515
Car05g03255 361 Pfam WD domain, G-beta repeat 320 354 IPR001680 GO:0005515
Car05g03255 361 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Car05g03255 361 PANTHER - 3 361 - -
Car05g03255 361 PANTHER TRANSDUCIN BETA-LIKE 3 3 361 - -
Car05g03255 361 Gene3D - 6 199 IPR015943 GO:0005515
Car05g03255 361 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 361 IPR001680 GO:0005515
Car05g03255 361 SMART WD40_4 274 313 IPR001680 GO:0005515
Car05g03255 361 SMART WD40_4 316 355 IPR001680 GO:0005515
Car05g03255 361 SMART WD40_4 6 45 IPR001680 GO:0005515
Car05g03255 361 SMART WD40_4 228 267 IPR001680 GO:0005515
Car05g03255 361 SMART WD40_4 50 91 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03255 Car-Chr5 77281029 77288427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03255 10 92 Miscellaneous Gene Families AT5G08390 32.530 7.98e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03255 K24770 - gmx:100800482 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03255 05 77281029 77288427 Car05g03255 05 77281029 77288427 ECH