Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03239 ATGGGTTGTTTGCGTTTTATGTTTTTACAATTGCTGCTGTCTCTGTCTCTTTTATCTTTTGTGACTGCCATCGACACTTCTAAACTCTTCCAAGAGTGGTGTAAACAACATGGCAAAACATACCCTTCCGAACAGGAGAAACGCTACAGGTTCAACGTTTTCGAAGATAACTATGCCTTCGTCGCACAACACAACCAAATAGGAAATTCCAGTTATACCCTTTCTCTTAACGCTTTTGCAGATCTCACTCACCATGAATTCAAGGCCACTCGTCTCGGTTTGCCTCCTTCTTCTTTGCTCAGATTCAAATTCAACCGTTTTCAAGATCAACAACGTTCCGATGATTTTCTACAAGTTCCTTCTGAGATTGATTGGAGAAAGAATGGTGCTGTTTCTATTGTCAAAGACCAAGGAAGCTGTGGTGCTTGTTGGTCATTTTCAGCTACAGGCGCCATCGAAGGGATAAATAAAATTGTGACAGGTTCTCTTGTAAGCCTTTCTGAACAAGAACTGGTAGATTGCGATACAACCTATAATAGTGGTTGTGACGGTGGGCTCATGGACTACGCATACCAATTTATCATTGACAACAATGGGATTGACACCGAGGAAGATTACCCGTATCAAGCTCGACAACTACTTTGCAAAAAGGACAAGTTAAAAAGGCGCGTTGTTACAATCGATGGTTATACTGATGTGCCCCCAAACGACGAGAAAAAACTACTAAAGGCTGTCGCAGTCCAACCTGTTAGCGTAGGCATATGTGGTAGTGCAAGGGCTTTCCAGCTATACTCAAAGGGTATCTTCACGGGACCATGTTCGACTTCTTTGGATCATGCAGTGTTGATTGTCGGATACGGTTCTGAAAATGGGGTAGATTATTGGATTGTAAAGAATTCCTGGGGAAAATATTGGGGAATGAATGGTTACATTCACATGCTACGGAACACCGACAGTTCTGCAGGGTTATGTGGAATCAACATGTTAGCTTCATATCCAACGAAGACCAAACCTAACCCCCCTGTCCCACCTCCACCAGGTCCTATAAAGTGTAATCTGTTTACTTACTGTTCAGGAGGAGAAACATGTTGCTGTGCCAAGAAATTTCTTGGGATATGTTTCTCTTGGAAATGCTGTGGTGTAACTTCTGCTGTGTGTTGTAAGGACAAGCGTCACTGTTGTCCACTAGATTATCCAGTTTGTGACGCAAGCAATGGCCAATGTCTTAAGAGAATTGCAAATGGGACGATATTGATGACATCTGATAAAGAAGATCCTTTCCATCAGACAAGAGATTGGAGATCTAATTGA 1311 0.4233 MGCLRFMFLQLLLSLSLLSFVTAIDTSKLFQEWCKQHGKTYPSEQEKRYRFNVFEDNYAFVAQHNQIGNSSYTLSLNAFADLTHHEFKATRLGLPPSSLLRFKFNRFQDQQRSDDFLQVPSEIDWRKNGAVSIVKDQGSCGACWSFSATGAIEGINKIVTGSLVSLSEQELVDCDTTYNSGCDGGLMDYAYQFIIDNNGIDTEEDYPYQARQLLCKKDKLKRRVVTIDGYTDVPPNDEKKLLKAVAVQPVSVGICGSARAFQLYSKGIFTGPCSTSLDHAVLIVGYGSENGVDYWIVKNSWGKYWGMNGYIHMLRNTDSSAGLCGINMLASYPTKTKPNPPVPPPPGPIKCNLFTYCSGGETCCCAKKFLGICFSWKCCGVTSAVCCKDKRHCCPLDYPVCDASNGQCLKRIANGTILMTSDKEDPFHQTRDWRSN 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03239 436 SUPERFAMILY Cysteine proteinases 24 334 IPR038765 -
Car05g03239 436 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 137 148 IPR000169 -
Car05g03239 436 PRINTS Papain cysteine protease (C1) family signature 137 152 IPR000668 GO:0006508|GO:0008234
Car05g03239 436 PRINTS Papain cysteine protease (C1) family signature 279 289 IPR000668 GO:0006508|GO:0008234
Car05g03239 436 PRINTS Papain cysteine protease (C1) family signature 294 300 IPR000668 GO:0006508|GO:0008234
Car05g03239 436 Pfam Granulin 362 409 IPR000118 -
Car05g03239 436 PANTHER OS05G0508300 PROTEIN 18 368 - -
Car05g03239 436 Gene3D Cysteine proteinases 18 336 - -
Car05g03239 436 SUPERFAMILY Granulin repeat 348 381 - -
Car05g03239 436 SMART Inhibitor_I29_2 30 87 IPR013201 -
Car05g03239 436 Pfam Cathepsin propeptide inhibitor domain (I29) 30 87 IPR013201 -
Car05g03239 436 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 294 313 IPR025661 -
Car05g03239 436 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 18 368 - -
Car05g03239 436 SMART pept_c1 119 334 IPR000668 GO:0006508|GO:0008234
Car05g03239 436 Pfam Papain family cysteine protease 119 333 IPR000668 GO:0006508|GO:0008234
Car05g03239 436 Gene3D Granulin 348 412 IPR037277 -
Car05g03239 436 SMART GRAN_2 351 408 IPR000118 -
Car05g03239 436 CDD Peptidase_C1A 120 333 IPR039417 -
Car05g03239 436 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 277 287 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03239 Car-Chr5 77125749 77129052 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03239 - - mtr:MTR_3g112430 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03239 05 77125749 77129052 Car05g03239 05 77125749 77129052 ECH