Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03234 ATGTTGCTTCGGCGATTGCCATGGATGGCGGTTTCCGCTTCCGCACCATTTCCATTGCATTTTTCCACTCCCATCTCAAAACAACTCACCTTTTCCCCTTTATCCTTCTGctccacctccgacctccatctcactcaacaaccacAAATACCGgattatgaaacggataatcgtcgttcgcagctTTTGAAGCCCGGTCTTTATCTCGTAGGAACACCAATTGGAAATCTTGAAGACATCACCTTCAGAGCTCTTCGTGTGCTAAACTCCGCAGATATCATACTGTCAGAAGACACAAGGCACTCTGGGAAATTGCTTCATCACTACAATATCAAAACACCCCTGATGAGTTATCACAAGTTCAATGAAGCACAAAGGGAACAGCTTGTGCTCAGGAGGTTGAAACAAGGTGAGATTGTGGCACTTATAAGTGACGCTGGAACGCCGGGTATCAGTGATCCTGGTATGGAGTTGGCCAAATTATGTGTTAGTGAAAATGTTCCCGTTGTTCCAATCCCAGGGCCCTGTGCTTTGGTATCAGCTCTTTCTGCCTCGGGGTTATCCACTGATGAATTTACATTTGTTGGTTTTCTTCCAAAACATTCGGGATCAAGAAGTAAAAGGCTCACGGCATCGGCACAGCAAACAGCAACACAAATATTTTATGTTCCTCCTCACAAGCTTTCTCAATTTCTTGAAGAGGGTTCGTCAATTTTTGGCGATACAAGGAGATGTGTTATTGCTCGAGAAATGACCAAGTTTCATGAAGAGTTTTGGCGTGGTACTCTTGGTGAAGCCAACAAAGTATTTTCTATTCGTCAACCAAAGGGAGAACTTACCATATTGATTGAAGGGCAAGCAAATTCTAAAGTTGAGCCTCCGTCAGACATCCAACTTGAGAGTGAACTAAGAGAATTAATTGAAAATGGCGAGAGTCTTTCCACGGCTGTCAAATTGGTTACTGGAAAAACGCGATTCAAGTTAGTGGCAGattcttcctggagagacagacatcatgtaaaacaatcgaagtatttgttgctcaatccttcaactaggatgacaatgggcttccatcaagTGGAATGGTTTACTAATGCTGCTGAACAACTACTGATCTTGAATGAGTTGGTTGTTGCACTAGCATTCACACTGTTGCCTTGGCTTCCCATGGCTCAAATCTTAAAGGCACACTCGGTTTATAGGGCAGCAAATTTGATTGTACAGACTTTGATCACTTGGGATGTTGAAGTAGATGTAGAAAAAGTGCCCTAG 1275 0.3788 MLLRRLPWMAVSASAPFPLHFSTPISKQLTFSPLSFCSTSDLHLTQQPQIPDYETDNRRSQLLKPGLYLVGTPIGNLEDITFRALRVLNSADIILSEDTRHSGKLLHHYNIKTPLMSYHKFNEAQREQLVLRRLKQGEIVALISDAGTPGISDPGMELAKLCVSENVPVVPIPGPCALVSALSASGLSTDEFTFVGFLPKHSGSRSKRLTASAQQTATQIFYVPPHKLSQFLEEGSSIFGDTRRCVIAREMTKFHEEFWRGTLGEANKVFSIRQPKGELTILIEGQANSKVEPPSDIQLESELRELIENGESLSTAVKLVTGKTRFKLVADSSWRDRHHVKQSKYLLLNPSTRMTMGFHQVEWFTNAAEQLLILNELVVALAFTLLPWLPMAQILKAHSVYRAANLIVQTLITWDVEVDVEKVP 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03234 424 Gene3D - 174 291 IPR014776 GO:0008168
Car05g03234 424 CDD RsmI 68 284 IPR008189 GO:0008168
Car05g03234 424 Gene3D - 52 173 IPR014777 GO:0008168
Car05g03234 424 ProSitePatterns RsmI AdoMet-dependent methyltransferase protein family signature. 144 155 IPR018063 GO:0008168
Car05g03234 424 Pfam Tetrapyrrole (Corrin/Porphyrin) Methylases 67 266 IPR000878 GO:0008168
Car05g03234 424 Hamap Ribosomal RNA small subunit methyltransferase I [rsmI]. 66 285 IPR008189 GO:0008168
Car05g03234 424 SUPERFAMILY Tetrapyrrole methylase 65 283 IPR035996 GO:0008168
Car05g03234 424 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 53 327 IPR008189 GO:0008168
Car05g03234 424 TIGRFAM TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 67 326 IPR008189 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03234 Car-Chr5 77094011 77097883 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03234 K07056 - gmx:100819709 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03234 05 77094011 77097883 Car05g03234 05 77094011 77097883 ECH