Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03224 ATGATCTCTCAATTCTTCGTGCTTTCTCAAAGAGGCGACAACATCGTCTTCCGCGACTATCGCGGTGAAGTACAAAAGGGAAGCGCTGAAACATTTTTCCGAAAAGTCAAGTTCTGGAAAGAAGACGCTGAAGGAGATGCCCCACCTGTTTTTAATGTAGATGGTGTGAACTACTTCCACGTGAAGGTTGCTGGATTGTTATTTGTTGCTACAACTAGAGTCAATGTTTCACCTTCTCTTGTTTTGGAACTTTTACAAAGAATTGCACGTGTCATCAAAGATTACCTTGGTGTTCTTAATGAAGATTCATTTAGAAAGAATTTTGTGCTTGTCTATGAACTGCTTGATGAAGTGATTGATTTTGGTTATGCGCAAACAACATCTACTGAAGTTTTGAAGTCATATGTTTTCAATGAGCCAATTGTGATGGATACTGCACTGATGCCTCCCCTTGGACCCGCTTCCATTTTTATGCAAGGGACCAAACGAATGCCAGGTACAGCTATTACCAAATCTGTTGTTGCTAATGAACCTGGTGGCAGGAAGAGAGATGAGATATTCGTTGATGTAATTGAGAAAATAAGTGTCACATTCAATTCTAGTGGATTTATACTTACTAGTGAGATTGATGGTACCATTCAAATGAAGAGTTATCTTACTGGTAACCCAGAGATTCGACTTGCTCTCAATGAGGACCTGAGTATAGGAACAAATGATTATAGGGGTTCTGGTGCTGTGATTTTAGATGATTGTAACTTCCATGAGTCTGTACACCTTGATAGTTTTGATGTTGACCGAACTTTGTCTTTGGTTCCACCAGATGGTGAATTTCCTGTCATGAACTATCGTATAACTCAACCATTTAAGCCACCCTTTCGTATTAACGCATTGATTGAAGAAACAGGATCACTCAAGGCTGAAGTGACCATTAAAGTGCGAGCTGAATTCAACTCAAGCATCAATGCTAACACTGTTCTTGTACAGATGCCACTTCCAACATTCACAGCTCGTGTTAATTTTGAGTTAGAACCTGGAGCAGTTGGACACACAACTGATTTTAGGGAAGCAAATAAAAGACTGGAATGGGGACTCAAAAAGGTTGTCGGTAGCTCTGAACATACTTTACGTGCAAAGCTGACGTTTTCACAGGAGTTACATGGAAATATCATGAAAGAAGCAGGGCCTCTTAGCATGACATTTACGATACCTATGTACAATTCTTCAAGGCTTCAGGTGAAATATTTACAAATAGCAAAAAAGTCAAAAACTCATAATCCATACCGATGGGTTAGATATGTAACCCAAGCAAACTCttaa 1317 0.3948 MISQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKEDAEGDAPPVFNVDGVNYFHVKVAGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEVIDFGYAQTTSTEVLKSYVFNEPIVMDTALMPPLGPASIFMQGTKRMPGTAITKSVVANEPGGRKRDEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGTNDYRGSGAVILDDCNFHESVHLDSFDVDRTLSLVPPDGEFPVMNYRITQPFKPPFRINALIEETGSLKAEVTIKVRAEFNSSINANTVLVQMPLPTFTARVNFELEPGAVGHTTDFREANKRLEWGLKKVVGSSEHTLRAKLTFSQELHGNIMKEAGPLSMTFTIPMYNSSRLQVKYLQIAKKSKTHNPYRWVRYVTQANS 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03224 438 ProSiteProfiles Mu homology domain (MHD) profile. 183 438 IPR028565 -
Car05g03224 438 PRINTS Clathrin coat assembly protein signature 248 275 IPR001392 GO:0006886|GO:0016192|GO:0030131
Car05g03224 438 PRINTS Clathrin coat assembly protein signature 361 372 IPR001392 GO:0006886|GO:0016192|GO:0030131
Car05g03224 438 PRINTS Clathrin coat assembly protein signature 12 32 IPR001392 GO:0006886|GO:0016192|GO:0030131
Car05g03224 438 PRINTS Clathrin coat assembly protein signature 101 128 IPR001392 GO:0006886|GO:0016192|GO:0030131
Car05g03224 438 Gene3D - 1 141 - -
Car05g03224 438 CDD AP-4_Mu4_Cterm 178 438 - -
Car05g03224 438 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 2 437 - -
Car05g03224 438 Gene3D Mu homology domain, subdomain B 182 438 - -
Car05g03224 438 Pfam Adaptor complexes medium subunit family 182 437 IPR028565 -
Car05g03224 438 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Car05g03224 438 PIRSF AP_complex_mu 1 438 IPR001392 GO:0006886|GO:0016192|GO:0030131
Car05g03224 438 Gene3D Mu homology domain, subdomain B 290 401 - -
Car05g03224 438 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 182 437 IPR036168 -
Car05g03224 438 CDD AP4_Mu_N 3 142 - -
Car05g03224 438 PANTHER AP COMPLEX SUBUNIT MU 2 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03224 Car-Chr5 77001635 77007558 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03224 K12402 - gmx:100800985 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03224 05 77001635 77007558 Car05g03224 05 77001635 77007558 ECH