Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03130 ATGGCGGTTTCCGATAGTCCCAACGGTGGGTCTACCCCGCCACCGCCGCCACAACAAGAACAAGCCAACGATTATGAATTCTCAAAACCGATTTCTCTTGCTGGTCCCACCGACTCTGATCTACATCGTAATCTCGAATTAGAGAAGTTTTTGGTTGATTCCGGGCTTTATGAGAGCAACGAAGAAGCTGCAGCCAGACAAGAGGTTCTTCGCCGCCTCGATCAGATTGTGAAAAGCTGGGTGAAGCAATTGACCCGTCAACGAGGCTACACAGATCAGACGGTTGAGGATGCAAATGCTGTCATTTTCACTTTTGGATCTTATCGACTAGGGGTTCATGGACCTGGAGTGGACATAGATACTTTGTGCATTGGTCCTTCCTATGTGAATCGAGAGGAAGACTTCTTCATCATTTTGCATAACATCCTGGCTGAAATGGAAGAAGTTACCGAACTTCAACCTGTTCCCGATGCACATGTCCCAGTGATGAAATTCAAGTTCCAGGGAATATCTATTGATTTGCTGTATGCAAGTATATCTCTTTTGGTTGTGCCAGAAGACCTGGATATCTTACACGGTTCCATTTTGCATGATGTTGACGAACAAACTGTTCGAAGTCTTAATGGCTGCCGTGTGGCAGATCAAATTCTTAGACTTGTTCCAAATGTTGAGCACTTCCGAACTACGCTGAGGTGTTTAAAGTTTTGGGCTAAAAGACGCGGCGTTTATTCAAATGTTACTGGATTCCTTGGAGGTGTAAATTGGGCTATTTTAGTTGCTCGAGTTTGCCAGCTTTACCCTAATGCCATCCCCAGTATGTTGGTTTCTAGATTCTTCAGGGTCTATACACAGTGGCGGTGGCCAAACCCTGTAATGTTATGCTCTATCGAAGAGAATGGATTGCATTTCCCTATATGGAATCCTCGTAGAAACTACAGGGACAGGTATCACATTATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCCAGCTATAACGTTTCGACAAGCACTCTTCGTGTTATGATGGAACAGTTCCGCTATGGCAACGAGATTTGTGACGAAATTGAGCTTAACAAATCACAGTGGAGTGCACTTTTTCAGCCATATGTCTTTTTTGAGGCATACAAAAACTATTTACAAGTAGACATAGTTGCATTAGATGCTGATGATTTACTATCATGGAGAGGTTGGGTGGAATCCCGACTGAGACAGCTAACCCTGAAGATTGAGAGAGATACAAATGGGATGCTGCAGTGTCATCCTTATCCACATGAGTACACAGACACATCCAAGCCTTGTGCGCATTCTGCATTTTTCATGGGTTTGCAAAGAAAAGAGGGAATAAGAGGTCAAGAAGGGCAGCAATTTGATATACGTGGAACGGTTGATGAGTTCAGACGAGAAATTATTATGTACATATACTGGAAGCCTGGGATGGAAATTTATGTTTCTCATGTTCGTAGAAAGCAGCTCCCTGCATTTGTTTTTCCAGATGGTTACAAACGTGCTCAAAGTGCTACTCTGGATCTAGCTCTTCTGAAAGGTGCATGA 1557 0.4355 MAVSDSPNGGSTPPPPPQQEQANDYEFSKPISLAGPTDSDLHRNLELEKFLVDSGLYESNEEAAARQEVLRRLDQIVKSWVKQLTRQRGYTDQTVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREEDFFIILHNILAEMEEVTELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDILHGSILHDVDEQTVRSLNGCRVADQILRLVPNVEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENGLHFPIWNPRRNYRDRYHIMPIITPAYPCMNSSYNVSTSTLRVMMEQFRYGNEICDEIELNKSQWSALFQPYVFFEAYKNYLQVDIVALDADDLLSWRGWVESRLRQLTLKIERDTNGMLQCHPYPHEYTDTSKPCAHSAFFMGLQRKEGIRGQEGQQFDIRGTVDEFRREIIMYIYWKPGMEIYVSHVRRKQLPAFVFPDGYKRAQSATLDLALLKGA 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03130 518 Gene3D Beta Polymerase, domain 2 58 214 IPR043519 -
Car05g03130 518 PANTHER NUCLEAR POLY(A) POLYMERASE 4 14 507 - -
Car05g03130 518 PIRSF PolyA_polymerase 16 513 IPR014492 GO:0004652|GO:0005634|GO:0043631
Car05g03130 518 PANTHER POLY A POLYMERASE 14 507 - -
Car05g03130 518 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 373 498 IPR011068 GO:0003723|GO:0016779|GO:0031123
Car05g03130 518 Pfam Poly(A) polymerase predicted RNA binding domain 373 432 IPR007010 GO:0003723|GO:0043631
Car05g03130 518 Gene3D - 28 368 - -
Car05g03130 518 MobiDBLite consensus disorder prediction 1 26 - -
Car05g03130 518 SUPERFAMILY PAP/OAS1 substrate-binding domain 221 370 - -
Car05g03130 518 SUPERFAMILY Nucleotidyltransferase 25 219 IPR043519 -
Car05g03130 518 CDD NT_PAP_TUTase 65 220 - -
Car05g03130 518 Pfam Poly(A) polymerase central domain 28 369 IPR007012 GO:0004652|GO:0043631
Car05g03130 518 Gene3D Poly(A) polymerase predicted RNA binding domain 372 488 - -
Car05g03130 518 Pfam Nucleotidyltransferase domain 99 175 IPR002934 GO:0016779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03130 Car-Chr5 76079475 76083659 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03130 K14376 - gmx:100802620 918.302