Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03125 ATGAGTGTTGTTTCTCATTACGCGGTTCCCTCACGCTTCGTCCCTTCACTGTCCTGTGCTGCTTCAACTATCATCCGTTCTCGTTTCAGAGCCACCATTCGATGTTGTACCACCCTATCCGATACTCACTCACACACTACCACTCCAACCTCTATAAAGAAACGAGTTGTTTCAGGAGTTCAACCTACTGGATCAATTCACCTTGGAAATTACTTTGGCGCCATCAAAAATTGGGTTTCCCTTCAGAATGTGTATGATACACTTTTCTTCATTGTGGATCTGCATGCGATTACATTGCCTCATGACACACAACAACTATCCAAGGATACAAAGTCAACTGCAGCCATTTACCTGGCATGTGGGGTGGATCCTTCAAAGGCTTCAGTTTTTGTACAGTCTCATGTCCGTGCACATGTAGAATTGATGTGGCTGCTAAGTTCCATAACACCAATCGGTTGGCTGAACAGAATGATACAGTTTAAAGAAAAATCTCGCAAGGCGGGGGACGATGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCATTTGGAGTTGACCCGTGACTTAGCTGAACGAGTTAATAATTTATATGGAGGAAGAAAGTGGAAGAAATTAGGCGGCCGAGGTGGTGCTATATTTAAGGTTCCAGAACCCCTTATACCTCCAACTGGAGCCCGAATTATGTCCCTAACTGATGGCCTGTCGAAGATGTCAAAATCTGCACCTTCTGATCAGTCCAGAATCAATATTCTTGATCCTAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAAACTGATTCACTTCCATGCTTGGAATTCGACAATCCTGAGAGGCCTGAATGTAATAATCTTCTTTCCATATACCAGCTCGCATCTGGAAAGACAAAAGAGGTCAGAAAGGATTATATTTCCTTTCCATTTATAATTGTTCGCTATGAGGAACTCATGTCAGATTCAGGTTATTTAGACAAAGTATTAGAAGAAGGTGCTAGAAATGCAGCAGATATAGCGGATGCTACGCTTCATAATGTTTACCAAGCAATGGGATTTTTGAGGAGACACTGA 1134 0.4215 MSVVSHYAVPSRFVPSLSCAASTIIRSRFRATIRCCTTLSDTHSHTTTPTSIKKRVVSGVQPTGSIHLGNYFGAIKNWVSLQNVYDTLFFIVDLHAITLPHDTQQLSKDTKSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSITPIGWLNRMIQFKEKSRKAGDDEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGRGGAIFKVPEPLIPPTGARIMSLTDGLSKMSKSAPSDQSRINILDPKDLIANKIKRCKTDSLPCLEFDNPERPECNNLLSIYQLASGKTKEVRKDYISFPFIIVRYEELMSDSGYLDKVLEEGARNAADIADATLHNVYQAMGFLRRH 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03125 377 SUPERFAMILY Nucleotidylyl transferase 54 373 - -
Car05g03125 377 PRINTS Tryptophanyl-tRNA synthetase signature 116 135 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Car05g03125 377 PRINTS Tryptophanyl-tRNA synthetase signature 193 214 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Car05g03125 377 PRINTS Tryptophanyl-tRNA synthetase signature 66 82 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Car05g03125 377 PRINTS Tryptophanyl-tRNA synthetase signature 258 268 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Car05g03125 377 PANTHER BNAA04G15180D PROTEIN 44 373 - -
Car05g03125 377 TIGRFAM trpS: tryptophan--tRNA ligase 53 321 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Car05g03125 377 Gene3D - 249 341 - -
Car05g03125 377 Hamap Tryptophan--tRNA ligase [trpS]. 53 374 IPR024109 GO:0004830
Car05g03125 377 Pfam tRNA synthetases class I (W and Y) 55 320 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Car05g03125 377 CDD TrpRS_core 55 327 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Car05g03125 377 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 62 71 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Car05g03125 377 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 44 373 - -
Car05g03125 377 Gene3D HUPs 56 372 IPR014729 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03125 K01867 - gmx:100780447 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03125 05 76031334 76041967 Car05g03125 05 76031334 76041967 ECH