Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g03111 | ATGGAGTCTATTGCCTCCAATTCTAATAATTCAACACCAAATAATAATAACCATCGTCGACACTCTCGTTTCAAACACAGCCAACCAATTTCCGACCGAATAGTGCGAGCActccgtcaccgtctccgtctcctccaccgtaccggctccACCTTCTTTATATTAGGCGCAACCGGAAACGTGTACACAGTAATCTTATCCTCCACACCCTCATGCACGTGCCCCGACCGAACAACACCATGCAAACACATCCTATTCGTTATAATTCGAGTCTTAGGTGTATCTTCTACGGACGCATGCGTGCGTAGAAGAAACCTAAGACCATGCCAGCTTCAACGGCTTCTAAACATGCCAACTTTGAATGAAGCAGTTGCAGGATATTCTGTTCGACAGAGGTTTCACCAAGTGTTCTTTGAAGGAGGGGGATCAAAGAGGGAGAGAATAGAGATGGAGGAAGGTGCCACGTGTCCTGTATGTCTTGAAGAGATGGGGAAGGAAGAGAGGTTGGTTGCGTGTGAAAGTTGTAGGAATGGAATTCATGAAGAGTGTTTGGTGAGGTGGAAGAGAAGCAGAGGAAGAAGATCGGTTAGTTGTGTGATTTGTAGAGCAAGGTGGAGGAATAGAGGGGAACAGGATAAGTATGTTAACTTATCTGCTTATGTTAGTGAGGAGGAAGATTTGCAAGATGGGGGTGTTTGCACTGTCTAG | 708 | 0.4237 | MESIASNSNNSTPNNNNHRRHSRFKHSQPISDRIVRALRHRLRLLHRTGSTFFILGATGNVYTVILSSTPSCTCPDRTTPCKHILFVIIRVLGVSSTDACVRRRNLRPCQLQRLLNMPTLNEAVAGYSVRQRFHQVFFEGGGSKRERIEMEEGATCPVCLEEMGKEERLVACESCRNGIHEECLVRWKRSRGRRSVSCVICRARWRNRGEQDKYVNLSAYVSEEEDLQDGGVCTV | 235 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g03111 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 156 | 202 | IPR001841 | - | |
| Car05g03111 | 235 | Pfam | SWIM zinc finger | 64 | 90 | IPR007527 | GO:0008270 | |
| Car05g03111 | 235 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Car05g03111 | 235 | PANTHER | - | 1 | 227 | - | - | |
| Car05g03111 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 222 | IPR013083 | - | |
| Car05g03111 | 235 | Pfam | Ring finger domain | 155 | 202 | IPR001841 | - | |
| Car05g03111 | 235 | SUPERFAMILY | RING/U-box | 146 | 207 | - | - | |
| Car05g03111 | 235 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Car05g03111 | 235 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 148 | 208 | IPR011016 | GO:0008270 | |
| Car05g03111 | 235 | ProSiteProfiles | Zinc finger SWIM-type profile. | 62 | 92 | IPR007527 | GO:0008270 | |
| Car05g03111 | 235 | PANTHER | RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 | 1 | 227 | IPR039903 | GO:0061630 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g03111 | - | - | var:108321788 | 337.035 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Car05g03111 | 05 | 75899341 | 75900223 | Car05g03111 | 05 | 75899341 | 75900223 | ECH |