Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03105 ATGTCTTTCACAGCCTCACCATCTATAATAAGAAACTCCAATTCATGGCCCAAAAACATGGTTGTTTGTGATATGCCTCATCATGCTTGTAGAGACAGCTCTTTCTTTCCAAACAAAGGCATTTCTAAAGCCCGACGTAATCTTCAAAATCATTTGACCGTCGCAAATGTTGCCAGTCCATTGCATGTAACTGCTCCACCACCGGAGAAACCTCCGGGGACCACCGGTGGCCGCCAACACCATGTTGCATGGACTAGTATCTCCCAAGAGAGATGGGAAGGAGAACTTCTTGTTCAAGGACATATTCCACTCTGGCTGAAAGGAACGTATCTAAGGAATGGCCCGGGCATGTGGAACATAGGAGACTACAACTTCAGGCACCTTTTTGACGGGTACGCCACCTTGGTCGGGCTTTACTTTGACGACGGGCGATTAATCGCCGGCCACCGACAAATCGAATCTGAAGCCTATCAAGCAGCAAAGAAGAATCAAAAGATATGTTACCGTGAATTTTCAGAAGTGCCTAAGGCTGAAAATTTCTTGGCTTATGTGGGGGAGCTAGCAAGCCTTTTCTCCGGTGCTTCGCTGACCGACAATGCCAACACCGGAGTGGTGAAGCTCGGTGATGGAAGGGTGGTTTGTCTGACGGAGACACAAAAAGGGTCCATAGTGGTAGACCCTAACACATTGGAGACAATTGGCAAATTTGAGTATAGTGATTCTTTAGGAGGTCTCATTCACTCTGCACACCCTATTGTGACGGATAATGAGTTTTTAACGTTGATCCCTGACCTTGTGAAATCAGGTTACTTGGTGGTGAGGATGGAACCTGGCTCTAATGAGAGGAAGGTTATAGGTCGGGTCGATTGTCGGGGCGGATCATCGCCCGGTTGGGTCCATTCTTTCCCTGTTACTCAACACTATGTTATTGTGCCTGAAATGCCATTGAGGTATTGTGCTCAGAATTTGCTCAGAGCTGAACCAACTCCATTATACAAATTTCAGTGGCATCCTGAGTCCAAAGCTTTTATGCATGTTATGTGCAGGACTAGTGGAAACATTGTGGCAAGTGTGGAAGTGCCTTTGTTTGTTACTTTCCATTTCATAAATGCATATGAAGAGCAAGATGAAGATGGGAGGGTGACTGCTGTCATTGCTGACTGCTGTGAGCACAATTCAAACACTTCCATTCTTGATAAGCTTAGATTACAGAACCTTCGCTCATTTAATGGCAATGATGTTCTACCAGATGCTAGGGTTGGTCGGTTCAGAATACCACTGGATGGAAGTCCATATGGAACATTAGAAGCAGCATTGGATCCAAATGAACATGGAAGAGGCATGGACATGTGTAGCATAAACCCTAATTATTTAGGGATGAAATACAGATATGCCTATGCTTGTGGGGCACACCGCCCTTGTAACTTCCCAAACACCCTCACCAAGATTGATCTACAATTGAAAAGGGCTAAGAACTGGTATGAAGATGGTGTTGTGCCCTCAGAACCATTCTTTGTGCCTCGACCAGGAGCAACTGAGGAAGATGATGGTGTAGTAATCTCCATAATCAGTGAGAAAAATGGAGAAGGATATGCATTGGTGTTAGATGGTTCCACTTTTGAAGAGGTAGCTAGGGCTAAGTTCCCTTATGGACTTCCATATGGGTTACATGGATGCTGGGTTCCAAAACAGTAA 1695 0.4525 MSFTASPSIIRNSNSWPKNMVVCDMPHHACRDSSFFPNKGISKARRNLQNHLTVANVASPLHVTAPPPEKPPGTTGGRQHHVAWTSISQERWEGELLVQGHIPLWLKGTYLRNGPGMWNIGDYNFRHLFDGYATLVGLYFDDGRLIAGHRQIESEAYQAAKKNQKICYREFSEVPKAENFLAYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIVVDPNTLETIGKFEYSDSLGGLIHSAHPIVTDNEFLTLIPDLVKSGYLVVRMEPGSNERKVIGRVDCRGGSSPGWVHSFPVTQHYVIVPEMPLRYCAQNLLRAEPTPLYKFQWHPESKAFMHVMCRTSGNIVASVEVPLFVTFHFINAYEEQDEDGRVTAVIADCCEHNSNTSILDKLRLQNLRSFNGNDVLPDARVGRFRIPLDGSPYGTLEAALDPNEHGRGMDMCSINPNYLGMKYRYAYACGAHRPCNFPNTLTKIDLQLKRAKNWYEDGVVPSEPFFVPRPGATEEDDGVVISIISEKNGEGYALVLDGSTFEEVARAKFPYGLPYGLHGCWVPKQ 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03105 564 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE-RELATED 43 563 - -
Car05g03105 564 Pfam Retinal pigment epithelial membrane protein 89 562 IPR004294 GO:0016702
Car05g03105 564 PANTHER BETA-CAROTENE DIOXYGENASE 43 563 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03105 Car-Chr5 75842448 75846029 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03105 K17913 - gmx:100814148 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03105 05 75842448 75846029 Car05g03105 05 75842448 75846029 ECH