Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03097 ATGGATTTCTATAGCAATAGAACCCTCTTTACCTTAATGAACAAAGAAAAAACAGAACAACCAGATTCCCCCAACATCCACCTTCATCTCCAAATCCAAACCCACAATAAAGAAACAAATGAACAAGATGTCCTTCCATTTAGTCCTTCTTTCCCACAATCACCATGGACACTTTCTCCTCTTCATTCTCCTTCCCCTTCATTGCTCTACCATTGCATAGCCTCCCTCCATCGCCACCACGGAAACATCTTTTCAATCGCAATTTCCAAAGGTTTCGTTTTCACAGGCTCCAACAGTTCAAGAATCCGTGTTTGGAAACAACCCGATTGCATCGACAAAGGGTATCTAAAATCATCCTCCGGCGATGTTCGATCCATTATAGCTTACAACAACATGGTTTTCACCACACACAAGGATCAAAAAGTTAGAATATGGAACTTCAACTTTTCAGAAACCTTTAAATCAAAAAAAGTAGCTACATTTCCAAAAAGAAGGAAAATAAACACTGTTCTAAACTTCAACAGAGCAAAAAACATCACAAAAAAACAGAGTGACTCTGTTTCTTGCATGGCTTATTACCATTCAGAAGGAATCTTATACACTGGCTCACATTATAAAACAGTCAAAGCTTGGAAAATCTCTGATAAAAAATGCGTTGAATTTGACTCATTTCTAGCACATGAAGATCGTGTAAACGATATCTTAGTGAACCAAGACGATGGTTGTGTTTTCACTTGTTCTTGTGATGGATCAGTGAAAATATGGAGAAGGGTATACACAGAAAAGTCACACACATTAACAATGACACTAAAGTTTCAACCTTCACCTGTGAATGCACTTGCATTGAGTTCATGTTTGAACCATTGTTTTCTGTATTCAGGTTGTTCAGATGGAATGATAAATATTTGGGAGAAGGAAAGGTTGTGTTATAGGTTCAACCATGGAGGATTTTTGAAGGGTCATCGTTTTGCAGTTCTTTGTGTTGTAACGGTTGGGAACATGGTGTTTAGTGGTTCAGAGGATACAACAATAAGAGTGTGGAGAAGAGAAAAAGGAAGTTGCTATCATGAGTGTTTGATGGTTTTGGAGGGACATAGAGGACCTGTGAGGTGTTTGAGTGCTTGTCTTGAGATGGAGAAAGTTGTTATGGGGTTTTTGGTTTATAGTGGTAGTTTGGATCAAACGTTTAAGGTTTGGAGGATTAAGGTTTTTTCGGAGGATGAAAATATTGATGTTGATGGAAATGATAATGGTGATGGGAGAGTGAAGATTAGAGAGTTTGATATGAGTCCTGTTTTGTCACCTTCTTGGGTAGAGAAGAAAATTCAGGGTAGTCCTTTTCAGTAG 1347 0.3823 MDFYSNRTLFTLMNKEKTEQPDSPNIHLHLQIQTHNKETNEQDVLPFSPSFPQSPWTLSPLHSPSPSLLYHCIASLHRHHGNIFSIAISKGFVFTGSNSSRIRVWKQPDCIDKGYLKSSSGDVRSIIAYNNMVFTTHKDQKVRIWNFNFSETFKSKKVATFPKRRKINTVLNFNRAKNITKKQSDSVSCMAYYHSEGILYTGSHYKTVKAWKISDKKCVEFDSFLAHEDRVNDILVNQDDGCVFTCSCDGSVKIWRRVYTEKSHTLTMTLKFQPSPVNALALSSCLNHCFLYSGCSDGMINIWEKERLCYRFNHGGFLKGHRFAVLCVVTVGNMVFSGSEDTTIRVWRREKGSCYHECLMVLEGHRGPVRCLSACLEMEKVVMGFLVYSGSLDQTFKVWRIKVFSEDENIDVDGNDNGDGRVKIREFDMSPVLSPSWVEKKIQGSPFQ 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03097 448 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 441 IPR045182 -
Car05g03097 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 255 IPR001680 GO:0005515
Car05g03097 448 CDD WD40 72 400 - -
Car05g03097 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 224 255 - -
Car05g03097 448 Pfam WD domain, G-beta repeat 223 255 IPR001680 GO:0005515
Car05g03097 448 Pfam WD domain, G-beta repeat 316 347 IPR001680 GO:0005515
Car05g03097 448 Pfam WD domain, G-beta repeat 357 399 IPR001680 GO:0005515
Car05g03097 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 357 IPR001680 GO:0005515
Car05g03097 448 Gene3D - 54 169 IPR015943 GO:0005515
Car05g03097 448 SUPERFAMILY WD40 repeat-like 71 399 IPR036322 GO:0005515
Car05g03097 448 PANTHER OS01G0232200 PROTEIN 1 441 - -
Car05g03097 448 SMART WD40_4 217 256 IPR001680 GO:0005515
Car05g03097 448 SMART WD40_4 263 304 IPR001680 GO:0005515
Car05g03097 448 SMART WD40_4 172 212 IPR001680 GO:0005515
Car05g03097 448 SMART WD40_4 311 348 IPR001680 GO:0005515
Car05g03097 448 SMART WD40_4 109 146 IPR001680 GO:0005515
Car05g03097 448 SMART WD40_4 355 400 IPR001680 GO:0005515
Car05g03097 448 SMART WD40_4 69 106 IPR001680 GO:0005515
Car05g03097 448 Gene3D - 170 413 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03097 Car-Chr5 75747467 75748914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03097 171 404 Miscellaneous Gene Families AT5G08390 23.457 8.14e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03097 - - mtr:MTR_3g110185 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03097 05 75747467 75748914 Car05g03097 05 75747467 75748914 ECH