Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03067 ATGGGAACCATTTTCATAAGACAACTCGAAAACCGTTACGTCGCGTCGTTGAAAAGCTGCTTCAGAATAGCCCAACTGAAGAAGATTCACGCTCACGTCGTAAAGCTTTCACTTTCACAGAGCAACTTTTTGGCCACAAAAATGTTGGATTCATGCGACAACATGGGCTATGTAGGTTACGCTACCTTGCTCTTCCAACAACTCCTTCATCCAAACAACTTCTCCTATAATGCTATCATCAGAACTTACACCCACAATCGACACCATTCCTTAGCAATCACTATCTTCATTCAAATGCTCGCACATTCAACAAAATCATCTTTTCCAGATAAATTCACGTTCCCATTTGTGGTAAAATCATGCGCGGGGATTCTGTGTCACCGTCTTGGTATGCAGATTCACGCGGTAGTTTTCAAATTTGGGTGTAATTCACATAATATAACAGAGAATGCTTTGATTGATATGTATACGAAATGTGGGAATTTGACCAATGCGTGCCATGTGTTTGATGAAATGACTCATCGAGATGTGGTTTCATGGAATAGTTTGATATTTGGGTATGCGAAATTGGGACAGATGAAGAGTGCAAGGAAGCTGTTTGACGAAATGCCTTTTAGGACAATTGTGTCTTGGACAACTATGATAACTGGGAATGCTAGAACAGGATGCTACGGTGATGCATTGGATATTTTTCGGGAGATGCAAATGGTGGGTATTGAACCTGATGAGATTAGTATTATAGCTGTTTTGCCAGCTTGTGCACAGCTTGGAGCTCTTGAGGTTGGGAAATGGATTCATATGTATGCTGACAAAAATGGGTTTTTGCAGAAGACTGGTATATGTAATGCATTGGTTGAAATGTATGCTAAGTGTGGTTGTATTGATGAAGCTAGGAGCTTGTTTGATCAGTTGGTTGAGAAGGACGTGATTTCTTGGAGCACCATGATTGGAGGGCTAGCTAATCATGGAAAAGGTTATGCGGCAATTCAACTCTTTCAAGAAATGCAGAAGGCGCAAGTTACTCCTAATGAGATAACCTTTCTTGGTGTATTGTTGGCTTGCTCTCATGCAGGCTTGTGGGATGAGGGGTTGAAATATTTTGATGTTATGAGAGTGGATTATCATATAGAGCCAGAAATTGAGCACTATGGTTGCGTCGTTGATCTTCTCGGACGCTCAGGACGCCTTGGTCAGGCTCTTGACACAATATTGAAGATGCCAATAAAGCCAGATTCGAGGATATGGAACTCTTTGTTGAGCTCTTGCAGGATTCATCGCAATCTTGAGATTGCTGTCATTGCAATGCAACAGCTTTTGGAGCTTGAGCCAGAAGAATCTGGGAACTATGTTTTGCTCGCAAACATATATGCAGAACTTGGAAAGTGGGAAGGTGTATCAAATATTAGGAAACTCATAAGAAACAAGAGGATAAAGAAAACCCCAGGGTGTAGTTCGATTGAGGTTAACAATGTGGTTCAAGAATTTGTTTCAGCTGACAACTCAAAGCCATTTTCACAAGAGGTCTTTGAGATCTTAGAAGGGCTCGCTTTACACCAAACTAGAACCAGTGACTTGATGGAACATGTCGAAGATGATGCTGATAATAGTTCACCTTTGGTCAAGTTTGGGAATGTTGGGAATGCCAAATCAGAGAATGTGTAG 1662 0.4128 MGTIFIRQLENRYVASLKSCFRIAQLKKIHAHVVKLSLSQSNFLATKMLDSCDNMGYVGYATLLFQQLLHPNNFSYNAIIRTYTHNRHHSLAITIFIQMLAHSTKSSFPDKFTFPFVVKSCAGILCHRLGMQIHAVVFKFGCNSHNITENALIDMYTKCGNLTNACHVFDEMTHRDVVSWNSLIFGYAKLGQMKSARKLFDEMPFRTIVSWTTMITGNARTGCYGDALDIFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLQKTGICNALVEMYAKCGCIDEARSLFDQLVEKDVISWSTMIGGLANHGKGYAAIQLFQEMQKAQVTPNEITFLGVLLACSHAGLWDEGLKYFDVMRVDYHIEPEIEHYGCVVDLLGRSGRLGQALDTILKMPIKPDSRIWNSLLSSCRIHRNLEIAVIAMQQLLELEPEESGNYVLLANIYAELGKWEGVSNIRKLIRNKRIKKTPGCSSIEVNNVVQEFVSADNSKPFSQEVFEILEGLALHQTRTSDLMEHVEDDADNSSPLVKFGNVGNAKSENV 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03067 553 Gene3D Tetratricopeptide repeat domain 282 534 IPR011990 GO:0005515
Car05g03067 553 Pfam PPR repeat family 307 354 IPR002885 -
Car05g03067 553 Gene3D Tetratricopeptide repeat domain 5 124 IPR011990 GO:0005515
Car05g03067 553 Gene3D Tetratricopeptide repeat domain 131 267 IPR011990 GO:0005515
Car05g03067 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Car05g03067 553 Pfam PPR repeat 209 239 IPR002885 -
Car05g03067 553 Pfam PPR repeat 178 203 IPR002885 -
Car05g03067 553 Pfam PPR repeat 74 100 IPR002885 -
Car05g03067 553 Pfam PPR repeat 150 176 IPR002885 -
Car05g03067 553 SUPERFAMILY TPR-like 156 464 IPR011990 GO:0005515
Car05g03067 553 Pfam E motif 425 487 IPR046848 -
Car05g03067 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Car05g03067 553 PANTHER OS05G0439300 PROTEIN 6 528 - -
Car05g03067 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 307 IPR002885 -
Car05g03067 553 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 528 - -
Car05g03067 553 TIGRFAM PPR: pentatricopeptide repeat domain 280 309 IPR002885 -
Car05g03067 553 TIGRFAM PPR: pentatricopeptide repeat domain 209 243 IPR002885 -
Car05g03067 553 TIGRFAM PPR: pentatricopeptide repeat domain 150 178 IPR002885 -
Car05g03067 553 TIGRFAM PPR: pentatricopeptide repeat domain 310 344 IPR002885 -
Car05g03067 553 TIGRFAM PPR: pentatricopeptide repeat domain 178 203 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03067 Car-Chr5 75469698 75473146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03067 48 515 Glycoside Hydrolase AT3G49170 31.343 1.72e-82 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03067 - - cam:101511241 1112.83