Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03044 ATGACTCGCGTGTATATTGGAAATCTTGAAACAGGAATTTCCAGGAGGGAACTTGAAAAAGATTTCCTTGTTTTTGGAGCTATACGAAACGTGTGGATTTCAAGGAAGCCTCCTGGTTACGCTTTCATTGACTTTTATAACAGCGGAAATGCGGAAGATGCTATTCGTGAATTAGATGGAAGACATGGTTGGAAGGTAGAGCTTTCTTTCACCTCtggaggtagaggtggaggtggagttggaagggaaggtggaggtggagttggaagggggggtggaggtggaggggaaggcagaggtggtggtggtggtTGGTTTGGTGGGGAAGGATCTAAGTTGAACTGTTTTCTGTGTGGTGAACCTGGTCATTTTGCCCAGGAGTGTCCTGGTGGTGATTCTGGAAGACGTCGGAGCCGCAGTCCACCTCGACGTATTAACAGTCCTCGTCAGCGGAGCTTGTCACCTCGTCGGCGCAGCTATAGCAAGTCACCTCCTGACCATGAGCGTGACTCACATGAGGGTGTAAAACATGCTAACGGAAATGGGTTAAAGGATGCACGTCGAAGCAGAAGTTGA 576 0.3906 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSGGRGGGGVGREGGGGVGRGGGGGGEGRGGGGGWFGGEGSKLNCFLCGEPGHFAQECPGGDSGRRRSRSPPRRINSPRQRSLSPRRRSYSKSPPDHERDSHEGVKHANGNGLKDARRSRS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03044 191 CDD RRM_SRSF3_like 3 69 - -
Car05g03044 191 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22-RELATED 2 170 - -
Car05g03044 191 MobiDBLite consensus disorder prediction 145 159 - -
Car05g03044 191 SMART c2hcfinal6 114 130 IPR001878 GO:0003676|GO:0008270
Car05g03044 191 MobiDBLite consensus disorder prediction 160 191 - -
Car05g03044 191 Pfam Zinc knuckle 114 129 IPR001878 GO:0003676|GO:0008270
Car05g03044 191 SUPERFAMILY Retrovirus zinc finger-like domains 101 134 IPR036875 GO:0003676|GO:0008270
Car05g03044 191 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Car05g03044 191 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 170 - -
Car05g03044 191 MobiDBLite consensus disorder prediction 72 104 - -
Car05g03044 191 ProSiteProfiles Zinc finger CCHC-type profile. 115 129 IPR001878 GO:0003676|GO:0008270
Car05g03044 191 SUPERFAMILY RNA-binding domain, RBD 2 103 IPR035979 GO:0003676
Car05g03044 191 MobiDBLite consensus disorder prediction 126 191 - -
Car05g03044 191 Gene3D - 1 106 IPR012677 -
Car05g03044 191 SMART rrm1_1 3 69 IPR000504 GO:0003723
Car05g03044 191 Gene3D - 110 160 - -
Car05g03044 191 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03044 Car-Chr5 75282669 75284424 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03044 K12896 - jre:109009558 150.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03044 05 75282669 75284424 Car05g03044 05 75282669 75284424 ECH