Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03001 ATGCTAATGGTTGGAATGTCGAACAATTTGGTTTCGGAGCCAATTACCAGCAAGCAGATGGCTCAACTGGAGCCGATTATGAACAGAGTTGATTCGTCGGGTAGACAGATGGAAATGGGACTATTGCGTCCTGTGTCCAGTGATTCCATGTCACAGCATCGGGGAACCTCAAATGGTGAACCGATGTCTTTAGGCTTACCACTTTCTAACCGGCAGAATGGCCGTGTAGAAGTGCAGGATGGTAATATGGGAATGCATCGGCTTCTTCTGCCGAACAAACAATCCATGCAAATGGGGATGATGTCAAATCATTTGGGGCCACATCAATTGTCAGCCGCTCATAAGCGGAAAGCAGCAACAGAACTGTCTTCCGGTAAGAGGGGGGCACCAATAGGACCCAGGCCTTGGGTGCAGCAAGGATCCAACAAAGGTTCTCCACAGATGCAATCCCCATCAAATGCTTCTAGGATGCAGCATTCGGCAGCATCTAGTAAGAGAAAAGCACAAATGGATTCCACCAACAAATCTGGGACTCCTCGGTCGTCAAATTCTAAAAGTCAGAATGCACAGATGAAAGGATCCTCCAAGGTTCAAACTGAATCATCTGAGAGTGTTAGGTCTAAGATGAGAGAGTCATTAGCTACTGCTCTGGCGTTGGTATCCCAGCAAGATAAACCTCCGGTCTTAAGTGATAATAAACCAAACCATACTGCCAACAGCTCACAATGTGCTGGTTCAGCATCCGCATCCGCTGACACTGCTCCGGAGCAAAGGCAGGAAATTTGTCAATCTGTTAATTCCTCTTTTTCTGTGGCTGGTTCCGTTGACCATGTGATGGGAGAGCACATGAATAGTACATCTGGTGAAGATTTTTCTGAGAAACCCAAGTATTATGAATCGGGATTCCCAAATGTGTCAAACAGTGAAGATATACTGAGTTCTGATAAGCAAGATTTCCAGTCTAGCTACATTTTGACTACTGATGATGTTCCTTTCAGTGACAGTTTCTTTGTGAAAGATGAACTTTTGCAGGGAAATGGTCTGTCCTGGGTATTATCTGATATTGTGGACATGGAAGATCAAAGGGAAAGTCAAACTGTTATAGAGAAGAAATTGGAACCCGAGGAAGCAGGTGGAGTTTGTAGGGAAGTGGTCCCTTTACCTGAACTTTTAGCATCAAGGATAGAAGCAGAGCTCTTCAAACTGTTTGGAGGTGTGAATAAGAAATACAAAGAGAAGGGAAGGTCTCTTTTGTTCAACTTGAAAGATCGCAATAATCCTGAACTCAGAGAAAGGGTTATGTTTGGTAAAATTGCTCCAGAACAATTATGTTCCATGACTGCAGAAGAACTTGCTTCAAAGGAGCTTTCTGAGTGGCGGATAGCCAAGGCCGAGGAGCTTGCTCAAATGGTGGTTTTACCTGATTCAGATGTTGATATTAGACGCCTAGTCAGGAAAACACATAaaggtgaatttcaagtagaagttgaacatgaagACAATGTTCCAGTGGCAGAGGTGTCTGGTGGTACCACATCCATTGCTCGAAGCCAAACAGTTAAAAAGGACGTGGAAGCCACTTCGTCTCCCAAACCTGATGTAAGCAAAAGCAATGTAAACAATATCAATGAAAAAAGCAACTTACAGACGGATAATCAATTTTCCATTACCATTTCTTCCAATGATGGGACTGATCCAATGCAAGGGCTTATGACAGATGATGCATTAAAGGACCCTGACTTTCTTCCACCAATTGTATCTCTTGATGAATTCATGGAATCCCTTGATTCTGAGCCACCGTTTGAAAACTTACCTGTAGAGTCTGGAAAAGCACCTATCTCAGACAAGGATGTTTCTGGGGTTGGATCTAAATCCAAATCTTCTGATTTAACTCCAAGCGATGTCAGTGCTAATAAGTCAGATAAGCTTCAAAACACACTTTTAAGCACATATGATGAAGAGGAAAAAAAAGCTAATGCAGAATCAGGGTCCATTTTGTCTGATACAAAACACGGTGAAAGTCAATCTGACATGAATCTGACTGATGGTCATACCAAGGAAATGTCAATCGATGGCACAAAGTCAATTTCCAGTGATGCTAAGTTGAGAGCCAGTCAGTTGCACACAGAAGAGAAATATGGCAAGGAAAATGCATATTCAAAAACTACAGCCCCCATTAAGGGTGAGTGCTTCTGGGAGGGAATGCTTCAGCCGAATATCTCAACCACTGATTCAGTCATAAGCATCTTCAAAAGCGGTGAAAAAACTTCTGCCAAAGATTGGCCTGGGTTTCTCGAAATCAAGGGAAGGGTTCGACTGGATGCATTTGAAAAATTTCTGCTACAGCTTCCACAGTCAAGAACTCGTGCCATCATGGTTTCACATTTTGTTTCCAAAGGGTTGACACCTGAGGAGCAATCAACTCTCCGCGAGGTGGCTGACTCGTACATTGTGGACGAGAGAGTTGGATTTGCGGAACCTGTGCCTGGAGTTGAACTTTACTTTTGCCCACCTCATAAGAATACAGTTGAAATGCTCAGCAAGATACTTCCAAAGGAACAAATTGAGGCAGTTAAATCTATTGATAATGGTCTAATTGGTTTTATTGTATGGAGAAAAACTAATATAACTTCTATATCTCCCACTGCGCAATCACACCACAAACATAGCTCTAAAAAACCGTACTTGAGTAGAAGACAGCAAGAAACTAACGTAAATGCCAATTCTACCCATAAAGTAGCGCCCTCTACGGGCTTTAAGACCACCGAGAGTGCACTACCAgatgatgatgatgaggatgatgTTCCTCCTGGATTTGGGCCACCGGTAGCCCGGGTCGAGGATGACCTCCCAGAGTTTAATTTTTCGGGTAGTTCAATTCCATCATCACATTTGGTTCAAAAACCTATGGGACCAACTATGGTCCCATCTCACTCGGTTAACCAAACACCATCACGTCCTGCACAACAAATGAGGGAACTTGTACACAAATATGGTCAAAACAAAACAAATGTATCTTCAGTAAACTGGCCGGACAAATTTGGGGGATCAATTCAACCTTGGAatgatgatgatgatgatATACCTGAATGGCAACCTCAATTGAGTCAGAATCAGTTTCCTCCACAACAAACAATGCATAATTTTCATCTTAGACCTCACATTGTGAATCAATCATTTGCTGGTTTACCCCAGCAGCAAATTATGCCGACACAATATCTGCAAACCCCTATGAATGTGACGCATGTCCAAAGAAATTTTGGCCCTCAGTGGGGTGCTTCTATTCAGGGTAACAATATACAACAAAACAGTGCACCACCCTATGGAACACCTGCATGGTCTCAACATGTTTCTAGAAATAGGGGACTTTAG 3372 0.4217 MLMVGMSNNLVSEPITSKQMAQLEPIMNRVDSSGRQMEMGLLRPVSSDSMSQHRGTSNGEPMSLGLPLSNRQNGRVEVQDGNMGMHRLLLPNKQSMQMGMMSNHLGPHQLSAAHKRKAATELSSGKRGAPIGPRPWVQQGSNKGSPQMQSPSNASRMQHSAASSKRKAQMDSTNKSGTPRSSNSKSQNAQMKGSSKVQTESSESVRSKMRESLATALALVSQQDKPPVLSDNKPNHTANSSQCAGSASASADTAPEQRQEICQSVNSSFSVAGSVDHVMGEHMNSTSGEDFSEKPKYYESGFPNVSNSEDILSSDKQDFQSSYILTTDDVPFSDSFFVKDELLQGNGLSWVLSDIVDMEDQRESQTVIEKKLEPEEAGGVCREVVPLPELLASRIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGKIAPEQLCSMTAEELASKELSEWRIAKAEELAQMVVLPDSDVDIRRLVRKTHKGEFQVEVEHEDNVPVAEVSGGTTSIARSQTVKKDVEATSSPKPDVSKSNVNNINEKSNLQTDNQFSITISSNDGTDPMQGLMTDDALKDPDFLPPIVSLDEFMESLDSEPPFENLPVESGKAPISDKDVSGVGSKSKSSDLTPSDVSANKSDKLQNTLLSTYDEEEKKANAESGSILSDTKHGESQSDMNLTDGHTKEMSIDGTKSISSDAKLRASQLHTEEKYGKENAYSKTTAPIKGECFWEGMLQPNISTTDSVISIFKSGEKTSAKDWPGFLEIKGRVRLDAFEKFLLQLPQSRTRAIMVSHFVSKGLTPEEQSTLREVADSYIVDERVGFAEPVPGVELYFCPPHKNTVEMLSKILPKEQIEAVKSIDNGLIGFIVWRKTNITSISPTAQSHHKHSSKKPYLSRRQQETNVNANSTHKVAPSTGFKTTESALPDDDDEDDVPPGFGPPVARVEDDLPEFNFSGSSIPSSHLVQKPMGPTMVPSHSVNQTPSRPAQQMRELVHKYGQNKTNVSSVNWPDKFGGSIQPWNDDDDDIPEWQPQLSQNQFPPQQTMHNFHLRPHIVNQSFAGLPQQQIMPTQYLQTPMNVTHVQRNFGPQWGASIQGNNIQQNSAPPYGTPAWSQHVSRNRGL 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03001 1123 MobiDBLite consensus disorder prediction 903 923 - -
Car05g03001 1123 MobiDBLite consensus disorder prediction 222 261 - -
Car05g03001 1123 MobiDBLite consensus disorder prediction 508 567 - -
Car05g03001 1123 Pfam Transcription factor S-II (TFIIS), central domain 387 467 IPR003618 GO:0006351
Car05g03001 1123 SUPERFAMILY Elongation factor TFIIS domain 2 387 455 IPR036575 GO:0006351
Car05g03001 1123 MobiDBLite consensus disorder prediction 138 202 - -
Car05g03001 1123 Pfam SPOC domain 729 871 IPR012921 -
Car05g03001 1123 MobiDBLite consensus disorder prediction 596 691 - -
Car05g03001 1123 MobiDBLite consensus disorder prediction 1096 1123 - -
Car05g03001 1123 SMART mid_6 359 462 IPR003618 GO:0006351
Car05g03001 1123 MobiDBLite consensus disorder prediction 45 67 - -
Car05g03001 1123 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 35 1106 - -
Car05g03001 1123 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 35 1106 - -
Car05g03001 1123 MobiDBLite consensus disorder prediction 903 937 - -
Car05g03001 1123 Gene3D - 357 454 IPR036575 GO:0006351
Car05g03001 1123 ProSiteProfiles TFIIS central domain profile. 360 479 IPR003618 GO:0006351
Car05g03001 1123 MobiDBLite consensus disorder prediction 508 576 - -
Car05g03001 1123 MobiDBLite consensus disorder prediction 110 210 - -
Car05g03001 1123 MobiDBLite consensus disorder prediction 662 683 - -
Car05g03001 1123 MobiDBLite consensus disorder prediction 225 261 - -
Car05g03001 1123 MobiDBLite consensus disorder prediction 620 647 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03001 - - gmx:100808809 1539.63