Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02984 ATGAAAACAATCAGACAAAAGAATGGCCTTTCTGGTTATACTTCTCGATTTGAGAGTGAATACGATTCGTTTGGTGCAGGTCATGGATGCAACAGTATATCTGCTGGACTTGGCATGGCAGTTGCACGGGATATTAAAGGGAGACGAGAACGTGTAGTTGCAGTTATCAGCAATTGGACCACTATGGCTGGTCAGGTGTACGAGGCAATGGGCAATGCAGGATATTTGGACTCAAATATGGTGGTGATTTTGAACGATAGCCGTCACTCTTTACTCCCAAACATTGAGGAGGGCCCAAAAACCTCTGTCAATGTCTTATCTAGTACCCTTAGCAGGCTCCAGTCCAGTAGATCTTTCCGAAGGTTTAGAGAAGCTGCTAAGGGTGTTACAAAACGTATTGGCTGGGGCATGCATGAATTGgcagctaaagttgatgaatatgctcgtggtatgatgggtccactaggtgctactttatttgaagaacttgggttgtattacataggcccagtagatggacacaatattgaAGATCTAATATGTGTTCTTCAACAAGTAGCTTCCCTGGATTCGATGGGTCCCGTCTTGGTTCATGTTATAACTGACGAAAATCAGGTTGAAGAACAGAATAAGAAAAGGTTTATAACAGACAAGCAGCAGGATGAATCTGTTAGTGCTGATTTGTTAGACAATGCTGGTCAGCCTCAAACTTATGGTGATTGCTTTGTGGAGACTTTGGTTGCTGAAGCTGAGAAAGACAGAGATATTGTGGTAGTTCATGCAGGAATTACAATggagccatcacttgaactatttcgggaaaaatttccagacaggatttttgacgtgggaattgctgagcaacacgcagtcacatttgcttctggtttagcatgtggtggattgaagccattttgcattataccttcttcgtttctacagagagcctatgaccaGGTGGTTCATGATGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATTACAAGTGCAGGACTGGTAGGTTCTGATGGTCCCCTCCAGTGTGGAGCATTTGATATAACGTTCATGTCATGCTTACCGAACATGATTGTCATGGCACCATCTGACGAGGTTGAACTTGTGCGCATGGTGGCTACTGCTACTCATATCAATGATCGGCCAGTTTGTTTTCGGTATCCTAGAGGTGCCTTGGTTGAGAAAAGCCATGCTATACAGGATGGAATCCCAATTGAGATTGGAAAGGGAAGAATTCTTGTTGAAGGTAAAGATGTTGCTTTACTGGGATATGGATCAATGGTTCAAAACTGTTTAAAGGCTCATTCACTTCTTGCAAAGCTTGGTGTTGAGGTGACTGTTGCTGATGCAAGGTTCTGCAAGCCCCTTGACATCAACCTTCTAAGGCAGCTTTGTAAACACCATTCTTTTCTAATTACTGTTGAGGAAGGATCTATTGGAGGATTTGGTTCCCATGTTGCTCAATTTATTGCTCTTGATGGACTTCTCGACAGAAGAATTAAGTGGCGACCAATTGTCTTACCAGACAGTTATATTGAACATGCATCACCAAATCAACAGCTTGACCAAGCGGGGTTGACTGGACATCATATTGCCGCCACAGCTTTGAGTTTGCTGGGACGTACACGTGAAGCTCTATCGTTTATGTGTTCGTGA 1674 0.3626 MKTIRQKNGLSGYTSRFESEYDSFGAGHGCNSISAGLGMAVARDIKGRRERVVAVISNWTTMAGQVYEAMGNAGYLDSNMVVILNDSRHSLLPNIEEGPKTSVNVLSSTLSRLQSSRSFRRFREAAKGVTKRIGWGMHELAAKVDEYARGMMGPLGATLFEELGLYYIGPVDGHNIEDLICVLQQVASLDSMGPVLVHVITDENQVEEQNKKRFITDKQQDESVSADLLDNAGQPQTYGDCFVETLVAEAEKDRDIVVVHAGITMEPSLELFREKFPDRIFDVGIAEQHAVTFASGLACGGLKPFCIIPSSFLQRAYDQVVHDVDQQKIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELVRMVATATHINDRPVCFRYPRGALVEKSHAIQDGIPIEIGKGRILVEGKDVALLGYGSMVQNCLKAHSLLAKLGVEVTVADARFCKPLDINLLRQLCKHHSFLITVEEGSIGGFGSHVAQFIALDGLLDRRIKWRPIVLPDSYIEHASPNQQLDQAGLTGHHIAATALSLLGRTREALSFMCS 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02984 557 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 2 298 IPR029061 -
Car05g02984 557 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 1 543 IPR005477 GO:0008661|GO:0016114
Car05g02984 557 Gene3D - 1 205 - -
Car05g02984 557 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 234 424 IPR029061 -
Car05g02984 557 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 1 556 - -
Car05g02984 557 SUPERFAMILY TK C-terminal domain-like 409 545 IPR009014 GO:0003824
Car05g02984 557 SMART Transket_pyr_3 236 401 IPR005475 -
Car05g02984 557 Pfam Transketolase, pyrimidine binding domain 237 398 IPR005475 -
Car05g02984 557 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 556 IPR005477 GO:0008661|GO:0016114
Car05g02984 557 CDD TPP_PYR_DXS_TK_like 242 395 - -
Car05g02984 557 Gene3D - 236 407 - -
Car05g02984 557 Pfam Transketolase, C-terminal domain 414 537 IPR033248 -
Car05g02984 557 Gene3D - 414 545 IPR009014 GO:0003824
Car05g02984 557 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 1 201 IPR005477 GO:0008661|GO:0016114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02984 Car-Chr5 74753002 74760050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02984 274 496 Acyl Lipid Metabolism Gene Families AT3G13450 24.268 2.96e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02984 K01662 - gmx:100793268 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02984 05 74753002 74760050 Car05g02984 05 74753002 74760050 ECH